PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552073.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NAC
Protein Properties Length: 337aa    MW: 39307 Da    PI: 5.3529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.95.6e-5581381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     +ppGfrFhPtdeelv +yLkkkv+++k++l +vi++vd+y++ePwdL+ +     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+
  XP_028552073.1   8 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIRDVDLYRIEPWDLQvErcrIGYEEQTEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKA 101
                     69****************************.9***************9545532233667*********************************** PP

             NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     v++ k++l+g++ktLv+ykgrap+g+k+dW+mheyrle
  XP_028552073.1 102 VHD-KKKLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 138
                     ***.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MDSIESCVPP GFRFHPTDEE LVGYYLKKKV ASQKIDLDVI RDVDLYRIEP WDLQVERCRI  60
GYEEQTEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVHDKKKLIG MRKTLVYYKG  120
RAPNGQKSDW IMHEYRLETE ENAQPQEEGW VVCRAFKKRT NSQTRSSLDN WDSNYNIFPE  180
HNSRLITTFM DQYPTFSPHL NAKSLYLKQE TELEGGLTKL LQYPNHFIQL PHLESSYNSF  240
PLIKTSSSSS LSINAHSVRE NEEEREGNYA VERVTDWREL DKFVASQLSQ EDGLVGDFKA  300
EEMNGSEMAL LLLENGREEE GKMKENSVDD IGFCVFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-123NAC family protein