PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551796.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 416aa MW: 45470.8 Da PI: 6.1578

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	53.9	4.1e-17	143	197	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkS.HLQkYRl 55 k +++Wt eLH+rFv+aveqL G ekA+P++ilelm+++ +tl+ L kYR+ XP_028551796.1 143 KVKVDWTAELHRRFVQAVEQL-GVEKAVPSRILELMGIDIVTLSFFSFpLLKKYRS 197 5689***************.******************98765414677776 PP
2	Myb_DNA-binding	25.6	2.8e-08	146	178	2	32
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg 32 WT+e++ ++v+av+qlG + +++I + mg XP_028551796.1 146 VDWTAELHRRFVQAVEQLGVEkaVPSRILELMG 178 57****************9999**99999 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MLAVTALRSS TNGDRAGDVG GAANQLPASD DFSVDFDFDL TELLAGFDDS DLLPGLQIDD 60 IDLPGPDTSA VEVEASCAGR DSQQEEREEE MALTNHEEVL SCEIKEETSA ASESNSSAET 120 PPEKDRARKS TAGQAKGSNG KRKVKVDWTA ELHRRFVQAV EQLGVEKAVP SRILELMGID 180 IVTLSFFSFP LLKKYRSHRK HMMAREVETT SSSQRRQLYA TWLPPAMGFP PNAPLPPPHP 240 QHLHLHPNMQ HFRPLHVWGH PTMNQSLVHM WPKQIVPIGP APNTPWVAPH PIQPSLLPPH 300 ASPWPAHFAR GTPYFPQPLQ TMRFPALPVP GIPPLPTYMP DSAIPAAMAQ PPPPCKQTGR 360 LVQLDAHPSK ESIDAALGDV LAQPWLPLPL GLKPPSLDSV MAELHKQGIA NVPPCS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MLAVTALRSS TNGDRAGDVG GAANQLPASD DFSVDFDFDL TELLAGFDDS DLLPGLQIDD  60
IDLPGPDTSA VEVEASCAGR DSQQEEREEE MALTNHEEVL SCEIKEETSA ASESNSSAET  120
PPEKDRARKS TAGQAKGSNG KRKVKVDWTA ELHRRFVQAV EQLGVEKAVP SRILELMGID  180
IVTLSFFSFP LLKKYRSHRK HMMAREVETT SSSQRRQLYA TWLPPAMGFP PNAPLPPPHP  240
QHLHLHPNMQ HFRPLHVWGH PTMNQSLVHM WPKQIVPIGP APNTPWVAPH PIQPSLLPPH  300
ASPWPAHFAR GTPYFPQPLQ TMRFPALPVP GIPPLPTYMP DSAIPAAMAQ PPPPCKQTGR  360
LVQLDAHPSK ESIDAALGDV LAQPWLPLPL GLKPPSLDSV MAELHKQGIA NVPPCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20570.1	6e-50	G2-like family protein