PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028551383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26202.6 Da PI: 8.3428 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v+++G ++W++I++ ++ gR++k+c++rw + XP_028551383.1 10 KGSWSPEEDALLMRLVERHGARNWTLISAGIQ-GRSGKSCRLRWCNQ 55 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.6e-18 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++vda++++G++ W+tIar ++ gRt++ +k++w++ XP_028551383.1 64 PFTATEDAIIVDAHREYGNK-WATIARLLP-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MEGGGDEKIK GSWSPEEDAL LMRLVERHGA RNWTLISAGI QGRSGKSCRL RWCNQLSPDV 60 HHRPFTATED AIIVDAHREY GNKWATIARL LPGRTDNAIK NHWNSTLRRR RRVEATSISA 120 ALSAAALSVP ESDSESGGKR PCRRDDLILR VVEPMTPEAV DPATSLSLSP PGESSAAAAP 180 SAPDIGTGGG CMEKGWLGNA TLMSVMKKVI AEEVRKYMGE LRLQSGGGFL SIVKAESTSN 240 GQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 1e-53 | MYB family protein |