PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551343.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 676aa MW: 74941.2 Da PI: 7.9676

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.5	1.8e-06	6	26	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e Cr fa+ G C++G+ C++ H XP_028551343.1 6 EACRAFAA-GNCRRGNECRYLH 26 68****.*********** PP
2	zf-CCCH	17.5	7.5e-06	165	184	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f++ G+C +G+ CkF H XP_028551343.1 165 PCKYFLQ-GHCIHGEGCKFLH 184 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MRGMNEACRA FAAGNCRRGN ECRYLHEDGC LRQIDRHHDT GLTDGRGIRL ERERQLVYGS 60 NETLTDTEER NKYSRDKLSG MHEEHHEDGS AANIQHPSYR SNERCFDFIR GRCFRGEACR 120 YIHDDASSDG GWSVKDEFSG RVHDRRGESA SFTRRIHHQR LSDIPCKYFL QGHCIHGEGC 180 KFLHQPGPLN IPLDRSLDGS QHSFVSAGPA GNSTSTNASE QQHQTARFSS TNPHRENLRG 240 VGDTQPIDKQ KFSKRSLSQD GHKRPHSSEQ QATTSEVCEE LSVNNPLPTT LIACQNADSR 300 GQNQSAPKIL HAQNHFAPPI PSKGQMLQVM HSHYQNGKNQ FAALEKPPDA HSFNANIQNR 360 SANPSSHQLN PQNLDSRAQV QKNISILSNS GSNFNHNGQI QQNGPLILVS HSGLGQQEIA 420 GDSQNVLPQN VQNQVQNIPA YISNGQNNLI VVPQPSLNPQ ILNSDDKNCQ LTMKKQLPHD 480 TDSSEVKPSQ FNSDNSITQK VVTIEQAAKI TDLSASLAQF FGSAAQNSQS SAAITPQPFL 540 NPNSLASFAT PIAPPLPTEV DTKQIDDKTE AHGTNGEAEN GKDVDTKKIK EAKEIRLFKC 600 ALVEFVKDAL KPKWKEGQLS KEAYKTIVKK VVEKVCGSLQ GPNVPQTQEK IDLYLLNCKA 660 KLTKLVQAYV EKFVNS

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MRGMNEACRA FAAGNCRRGN ECRYLHEDGC LRQIDRHHDT GLTDGRGIRL ERERQLVYGS  60
NETLTDTEER NKYSRDKLSG MHEEHHEDGS AANIQHPSYR SNERCFDFIR GRCFRGEACR  120
YIHDDASSDG GWSVKDEFSG RVHDRRGESA SFTRRIHHQR LSDIPCKYFL QGHCIHGEGC  180
KFLHQPGPLN IPLDRSLDGS QHSFVSAGPA GNSTSTNASE QQHQTARFSS TNPHRENLRG  240
VGDTQPIDKQ KFSKRSLSQD GHKRPHSSEQ QATTSEVCEE LSVNNPLPTT LIACQNADSR  300
GQNQSAPKIL HAQNHFAPPI PSKGQMLQVM HSHYQNGKNQ FAALEKPPDA HSFNANIQNR  360
SANPSSHQLN PQNLDSRAQV QKNISILSNS GSNFNHNGQI QQNGPLILVS HSGLGQQEIA  420
GDSQNVLPQN VQNQVQNIPA YISNGQNNLI VVPQPSLNPQ ILNSDDKNCQ LTMKKQLPHD  480
TDSSEVKPSQ FNSDNSITQK VVTIEQAAKI TDLSASLAQF FGSAAQNSQS SAAITPQPFL  540
NPNSLASFAT PIAPPLPTEV DTKQIDDKTE AHGTNGEAEN GKDVDTKKIK EAKEIRLFKC  600
ALVEFVKDAL KPKWKEGQLS KEAYKTIVKK VVEKVCGSLQ GPNVPQTQEK IDLYLLNCKA  660
KLTKLVQAYV EKFVNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-17	C3H family protein