PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551342.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 873aa MW: 97563.1 Da PI: 7.5413

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	203	223	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e Cr fa+ G C++G+ C++ H XP_028551342.1 203 EACRAFAA-GNCRRGNECRYLH 223 68****.*********** PP
2	zf-CCCH	17.1	1e-05	362	381	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f++ G+C +G+ CkF H XP_028551342.1 362 PCKYFLQ-GHCIHGEGCKFLH 381 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MDEKMKRRIP KWDVAAELHV DTVGHESALL EKVDDPCMNL TVVDSMNPII SMNLDGSDVN 60 QSATQTGEEG NNNIIHSDDI CEKTQISGQF DLEDDCKYGL KKQDWEPASQ DRNIAEHTEN 120 QDKSHKAVYD MPLDPEERHQ STRNMSPVDD RRRLHRKRSR SRSLSRDSRS RSWSANRGKS 180 PSYVSKQGSE RWTDKGRMRG MNEACRAFAA GNCRRGNECR YLHEDGCLRQ IDRHHDTGLT 240 DGRGIRLERE RQLVYGSNET LTDTEERNKY SRDKLSGMHE EHHEDGSAAN IQHPSYRSNE 300 RCFDFIRGRC FRGEACRYIH DDASSDGGWS VKDEFSGRVH DRRGESASFT RRIHHQRLSD 360 IPCKYFLQGH CIHGEGCKFL HQPGPLNIPL DRSLDGSQHS FVSAGPAGNS TSTNASEQQH 420 QTARFSSTNP HRENLRGVGD TQPIDKQKFS KRSLSQDGHK RPHSSEQQAT TSEVCEELSV 480 NNPLPTTLIA CQNADSRGQN QSAPKILHAQ NHFAPPIPSK GQMLQVMHSH YQNGKNQFAA 540 LEKPPDAHSF NANIQNRSAN PSSHQLNPQN LDSRAQVQKN ISILSNSGSN FNHNGQIQQN 600 GPLILVSHSG LGQQEIAGDS QNVLPQNVQN QVQNIPAYIS NGQNNLIVVP QPSLNPQILN 660 SDDKNCQLTM KKQLPHDTDS SEVKPSQFNS DNSITQKVVT IEQAAKITDL SASLAQFFGS 720 AAQNSQSSAA ITPQPFLNPN SLASFATPIA PPLPTEVDTK QIDDKTEAHG TNGEAENGKD 780 VDTKKIKEAK EIRLFKCALV EFVKDALKPK WKEGQLSKEA YKTIVKKVVE KVCGSLQGPN 840 VPQTQEKIDL YLLNCKAKLT KLVQAYVEKF VNS

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MDEKMKRRIP KWDVAAELHV DTVGHESALL EKVDDPCMNL TVVDSMNPII SMNLDGSDVN  60
QSATQTGEEG NNNIIHSDDI CEKTQISGQF DLEDDCKYGL KKQDWEPASQ DRNIAEHTEN  120
QDKSHKAVYD MPLDPEERHQ STRNMSPVDD RRRLHRKRSR SRSLSRDSRS RSWSANRGKS  180
PSYVSKQGSE RWTDKGRMRG MNEACRAFAA GNCRRGNECR YLHEDGCLRQ IDRHHDTGLT  240
DGRGIRLERE RQLVYGSNET LTDTEERNKY SRDKLSGMHE EHHEDGSAAN IQHPSYRSNE  300
RCFDFIRGRC FRGEACRYIH DDASSDGGWS VKDEFSGRVH DRRGESASFT RRIHHQRLSD  360
IPCKYFLQGH CIHGEGCKFL HQPGPLNIPL DRSLDGSQHS FVSAGPAGNS TSTNASEQQH  420
QTARFSSTNP HRENLRGVGD TQPIDKQKFS KRSLSQDGHK RPHSSEQQAT TSEVCEELSV  480
NNPLPTTLIA CQNADSRGQN QSAPKILHAQ NHFAPPIPSK GQMLQVMHSH YQNGKNQFAA  540
LEKPPDAHSF NANIQNRSAN PSSHQLNPQN LDSRAQVQKN ISILSNSGSN FNHNGQIQQN  600
GPLILVSHSG LGQQEIAGDS QNVLPQNVQN QVQNIPAYIS NGQNNLIVVP QPSLNPQILN  660
SDDKNCQLTM KKQLPHDTDS SEVKPSQFNS DNSITQKVVT IEQAAKITDL SASLAQFFGS  720
AAQNSQSSAA ITPQPFLNPN SLASFATPIA PPLPTEVDTK QIDDKTEAHG TNGEAENGKD  780
VDTKKIKEAK EIRLFKCALV EFVKDALKPK WKEGQLSKEA YKTIVKKVVE KVCGSLQGPN  840
VPQTQEKIDL YLLNCKAKLT KLVQAYVEKF VNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	162	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-17	C3H family protein