PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550306.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 331aa    MW: 36557.4 Da    PI: 5.4773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10167215355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_028550306.1 167 NSHSLAERVRREKISERMRILQDLVPGC----SKITGKAVMLDEIINYVQSLQ 215
                     58**************************....899*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MATPCSSMND TQHFLDTDET VLSLLKQSVE IDGSDNASSQ IMMVSAFGLS GGSRISESLC  60
PADFSVEEKQ MERNFMGKKR RTLSECGGFS LQSTIAKCAD AKEQNDVSPD FVKSSTDKDV  120
KKQKSELLPC YNSSKLTTKQ AKEISQDDDD PKEAYIHVRA KRGKATNSHS LAERVRREKI  180
SERMRILQDL VPGCSKITGK AVMLDEIINY VQSLQQQVEF LSMKLAAVNP ELNFDIEQNF  240
SRAARDGTPS VLGLSPVFST PYAHYPGAVQ IPSEMIVAAT ISQLSSIAQI ENMWDEELQN  300
AIQMTLIPPQ PINNSGFHVK DPKVGKNQLS I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-56bHLH family protein