PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550297.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 270aa    MW: 30256.6 Da    PI: 4.3794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07739437
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     W t+E+++l  av ++G+ +W++Ia +++ +Rt+
   XP_028550297.1  7 WGTWEELILGGAVLLHGTADWNAIATELQ-NRTD 39
                     *****************************.***7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MALFSLWGTW EELILGGAVL LHGTADWNAI ATELQNRTDF PDLFTPQVCE AKYEDLQERY  60
SGCDAWFEEL RSQRVAELKK ELEKSVDSIG TLQSKLESLT AEKESDCNNL DYFTSRSQSI  120
SPADVANGAD YFCKEASIDG LSAGSFTRNT ERDWAPEIEI AASCSLQDDD YRIEMASNLC  180
ADFGSGNFRR KRDPRKRKPC NSFKEASVGE SETRREDSSE GCMPSSEKFC AVQQEEPVVD  240
LAGIVDSISK HKDVSILRYK IEKQAGFGCW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199PRKRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.14e-20MYB_related family protein