PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G42150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 631aa MW: 70445.8 Da PI: 8.6052 | ||||||||
Description | DNA-binding bromodomain-containing protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.6 | 1.4e-13 | 13 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 ++ W+t+E++ll++av+++G+++W++++++++ +t+ c++++++++ AT2G42150.1 13 KQTWSTWEELLLACAVHRHGTESWNSVSAEIQklspnlCSLTASACRHKYFDLK 66 789*****************************9999997889999*****9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.1E-7 | 12 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-5 | 12 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-5 | 13 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-14 | 13 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.78E-5 | 15 | 66 | No hit | No description |
SMART | SM00297 | 2.9E-23 | 265 | 374 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 1.31E-17 | 270 | 372 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.5E-14 | 270 | 371 | IPR001487 | Bromodomain |
CDD | cd04369 | 2.40E-16 | 276 | 369 | No hit | No description |
Pfam | PF00439 | 1.9E-10 | 280 | 359 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 11.643 | 284 | 355 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MAKPENDVTL TEKQTWSTWE ELLLACAVHR HGTESWNSVS AEIQKLSPNL CSLTASACRH 60 KYFDLKSRFT QELPVPESVA EISTAPWLEE LRKLRVDELR REVEQYDLSI STLQSKVKQL 120 EEEREMSFIK PDTETENLDL ERKKERSDSG EPVPNPPVQL MNETISPDPK EIGSENTERE 180 EEMAGSGGGE SKLAGEDSCR GSCESVEKEP TTNSERVEPV SVTELIESED GASRGEEITS 240 DVQSSASLPR KGTSEPDKED QSPTSAKDFT VESQPLISFV EILLSHPCGS HFSRRLERQE 300 TIEYGTIIRE HVDFEIIRKR VEGGLYKSWR INFFRDLLLL VNNARVFYHR GSSEFKFAEQ 360 LHQLVKKQMT TTLKGLSNRD EISISPPKEE VVAIPSSKPV SSKPRMSVPN IVACRKRSAL 420 AAKPLLLLPP GPDKKAKKTD HVVDYDEKPV SDKDGEASGK DDDDSLIVKI MTRGRTSSTG 480 KVANRNDKNR DSSLNVDDSK DKVKKTDEEK KGGSKKKRAA SFLRRMKVGS SDDTLKRSSA 540 ADSSTTGKGG GAEQRKNNSN KADNKKTPIP KIRQTNKKAS PVKRSNNGRN SEREAAPSSS 600 SYPILAKRSR DAGEKEEASS YSPRLKKRAR R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 532 | 537 | DTLKRS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79573627 | 0.0 | ||||
Genevisible | 267631_at | 0.0 | ||||
Expression Atlas | AT2G42150 | - | ||||
AtGenExpress | AT2G42150 | - | ||||
ATTED-II | AT2G42150 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G42150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G42150 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY461606 | 0.0 | AY461606.1 Arabidopsis thaliana At2g42150 mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181745.1 | 0.0 | DNA-binding bromodomain-containing protein | ||||
TrEMBL | O48523 | 0.0 | O48523_ARATH; DNA-binding bromodomain-containing protein | ||||
STRING | AT2G42150.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6530 | 25 | 39 | Representative plant | OGRP3805 | 11 | 23 |
Link Out ? help Back to Top | |
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Phytozome | AT2G42150.1 |
Entrez Gene | 818815 |
iHOP | AT2G42150 |
wikigenes | AT2G42150 |
Publications ? help Back to Top | |||
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