PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550072.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 507aa MW: 56356.9 Da PI: 8.8946

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	61	87	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++ +G+Ck G C F+H+p XP_028550072.1 61 PGEPDCPYYLNSGYCKLGMYCGFNHPP 87 5789*********************96 PP
2	zf-CCCH	27	7.6e-09	130	152	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f++ +G+Ck+ +C+F+H++ XP_028550072.1 130 DCKFYLTNGWCKFNKTCTFNHPE 152 6********************96 PP
3	zf-CCCH	38.4	2e-12	243	268	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ffa+tG Ck+G C+F+H+ XP_028550072.1 243 PGEPDCPFFAKTGDCKFGLACRFNHP 268 5789*********************8 PP
4	zf-CCCH	28.3	3e-09	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lC f+ r+G+C yG +CkF H+ XP_028550072.1 321 GRPLCVFYGRYGYCGYGLTCKFDHP 345 89**********************8 PP
5	zf-CCCH	38.1	2.6e-12	452	478	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ffa+tG Ck+G+rC+F+H++ XP_028550072.1 452 PGEPDCPFFAKTGGCKFGSRCRFNHPR 478 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MELNGGGKKK NNVEPTRRTE LNIAKASASS LRQLPLGEES MQQISSRAGN NMDSESYPER 60 PGEPDCPYYL NSGYCKLGMY CGFNHPPREH YLETGKCNFG PAWKFHRPSY NPGIRKLNSL 120 GYPLRLNVID CKFYLTNGWC KFNKTCTFNH PEPSNSMPWW LSRTTPSQTL CPGELTSFNA 180 SPHWQVPSSY AQVILPQGLA QVPSWNTFPY YLNQQQNSGN VQFVGSGTAM NPPASYSSFP 240 LRPGEPDCPF FAKTGDCKFG LACRFNHPIA NITSTSDCEL SPEGLPLRPV SYTAHFLFAY 300 LEKFIQLALS RREYNQLFLQ GRPLCVFYGR YGYCGYGLTC KFDHPIAAPK GITESLSTSS 360 YNVPVVRQPL ESSSGPATLT LSVESYSVAS PGKLKRLPSS KRQKMNSDDE KLLISYLKYH 420 LNQQQNSGNV QFVGSGTAMG PPASYSSFPV RPGEPDCPFF AKTGGCKFGS RCRFNHPRIG 480 KITLTSECEL SPIGLPLRPV SYPAHFV

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MELNGGGKKK NNVEPTRRTE LNIAKASASS LRQLPLGEES MQQISSRAGN NMDSESYPER  60
PGEPDCPYYL NSGYCKLGMY CGFNHPPREH YLETGKCNFG PAWKFHRPSY NPGIRKLNSL  120
GYPLRLNVID CKFYLTNGWC KFNKTCTFNH PEPSNSMPWW LSRTTPSQTL CPGELTSFNA  180
SPHWQVPSSY AQVILPQGLA QVPSWNTFPY YLNQQQNSGN VQFVGSGTAM NPPASYSSFP  240
LRPGEPDCPF FAKTGDCKFG LACRFNHPIA NITSTSDCEL SPEGLPLRPV SYTAHFLFAY  300
LEKFIQLALS RREYNQLFLQ GRPLCVFYGR YGYCGYGLTC KFDHPIAAPK GITESLSTSS  360
YNVPVVRQPL ESSSGPATLT LSVESYSVAS PGKLKRLPSS KRQKMNSDDE KLLISYLKYH  420
LNQQQNSGNV QFVGSGTAMG PPASYSSFPV RPGEPDCPFF AKTGGCKFGS RCRFNHPRIG  480
KITLTSECEL SPIGLPLRPV SYPAHFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-72	C3H family protein