PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550059.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 333aa    MW: 38254.6 Da    PI: 8.486
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550059.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-1711959100
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                     d + s++l++p + + ++++       +tle +sg+ W v+l  ++  g+++l++GWkeFv+a++++egD +vF++ g+s+f   v +f++s
  XP_028550059.1  11 DQNFSQILTFPVNLMMDFKK---LAEVITLEGPSGNCWLVRL--SQLAGHVYLKEGWKEFVEAHHVEEGDCLVFEYCGSSRF--SVLIFDRS 95 
                     55566678999999877743...3457***************..99*******************************99999..99999985 PP
2B340.93.7e-13229325198
                     EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k l+ps+ + s   +++p +fa +h + +  ++++ l+  +++ W+  ++ +  s+++  t    +GW++Fv++n+L+ gD ++F l++ s+ 
  XP_028550059.1 229 FTKFLLPSHFSGShFFMTFPCDFAVKHLHLT--PQKIFLRY-HNKMWSAMYKLKSASNGHSVTgisgEGWRKFVQDNELCRGDGCIFVLSEASK- 319
                     788899999776636679*********5443..33566655.99*******9988888887777888*********************976444. PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                       +vkvf+
  XP_028550059.1 320 --RVKVFD 325
                     ..578776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MTSCQFVKFM DQNFSQILTF PVNLMMDFKK LAEVITLEGP SGNCWLVRLS QLAGHVYLKE  60
GWKEFVEAHH VEEGDCLVFE YCGSSRFSVL IFDRSGCERE AAYFVRIMNP IPTKECQAEE  120
KHERQLPDVL KFSSPRFPSD DNSSLQVVSD DEKSSSFKGK FGRRRFSTRS CAPNDKTNCE  180
HDIQSKKVEH SAKHDSVNTQ ERQTTGLKLK AEVRYLRGTK AIRAETPYFT KFLLPSHFSG  240
SHFFMTFPCD FAVKHLHLTP QKIFLRYHNK MWSAMYKLKS ASNGHSVTGI SGEGWRKFVQ  300
DNELCRGDGC IFVLSEASKR VKVFDVHIVR VDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-24B3 family protein