PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028549917.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 719aa MW: 81337.6 Da PI: 7.017 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.7e-06 | 82 | 103 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f++ G Ck+G+ C+ H XP_028549917.1 82 ECKFYLLPGGCKFGNDCRSLHH 103 7*****************9996 PP | |||||||
2 | zf-CCCH | 28.3 | 2.9e-09 | 117 | 140 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++rtG Ck+ + C+F+H+ XP_028549917.1 117 EKECPFYMRTGGCKFASHCRFHHP 140 689********************9 PP | |||||||
3 | zf-CCCH | 27.9 | 4.1e-09 | 238 | 264 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_028549917.1 238 PGEPECQYFMKTGYCKFKSACRYHHPK 264 5799*********************96 PP | |||||||
4 | zf-CCCH | 27.1 | 7.4e-09 | 371 | 396 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C++f++tG+Ck+ ++C+++H++ XP_028549917.1 371 GKPECQYFMKTGYCKFKATCRYHHPK 396 789*********************96 PP | |||||||
5 | zf-CCCH | 25.9 | 1.7e-08 | 512 | 537 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_028549917.1 512 GKPECQFFMKTGQCKFKSACRYHHPK 537 789*********************96 PP | |||||||
6 | zf-CCCH | 24.9 | 3.6e-08 | 655 | 679 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_028549917.1 655 EPECRYFMKTGHCKLKSACRYHHPK 679 799********************96 PP | |||||||
7 | zf-CCCH | 22.1 | 2.6e-07 | 692 | 715 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_028549917.1 692 DKPICTYYGR-GICKFGSACRYSHH 715 6799******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence |
MPMTTSTGTM EDKEFTKVEQ DNKMGLAGDH REITAVEKDT RIRSDETGSD TFVMDRKFNH 60 PLREGARGPE NITSSENVGQ IECKFYLLPG GCKFGNDCRS LHHVRLNFLG LPIRLGEKEC 120 PFYMRTGGCK FASHCRFHHP DPTAVIGDSF QDLKNGVPSQ HHVLAEQLCE TPMPSENPSN 180 EQTDFLGPFT PNRGFQENVH RKGNQTTTSP LHSREMNIND QRQILANRDT AEEYPQRPGE 240 PECQYFMKTG YCKFKSACRY HHPKSNVSFL GLPQRSSSQQ LRETPLPSEN TSKEQTAFLG 300 PSSSYVPDLF TPSHGLKTNA QWNGSQSVTN LLHPSEIKIV DQQQEFVKRD PAYEFSGGEP 360 QQYDAYPQRP GKPECQYFMK TGYCKFKATC RYHHPKSNLS FLGLPLRPAS NDCKQDGPVE 420 QICEVPLSSE DASNDQRAFL CPSSSDVQSL FTPIQGIQPN VQWNVDQAVT SLLYPQETKI 480 INHQQELASK DAAYEFSGGE PQQHDEYPQR PGKPECQFFM KTGQCKFKSA CRYHHPKSNL 540 SFPSLPLRSA SNNYEQNGSS EQLSEIPLSS ENALNDQRTV LSPSSSNVQG LFTPEQGLWT 600 TQQWNGDQMA TNPLHPPEIK KNEEKHELAN TDTAYDLNGG VKSQQLDEYP QRPNEPECRY 660 FMKTGHCKLK SACRYHHPKS NRSLLTPPLK PDKPICTYYG RGICKFGSAC RYSHHMEHT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-37 | C3H family protein |