PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028549713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 28717.3 Da PI: 6.2491 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 21 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ E+e+++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_028549713.1 21 RGNFNSHEEEIIIQLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 66 899*******************.*********.************996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence |
MRCSKSCRLR WTNYLRPGIK RGNFNSHEEE IIIQLQALLG NRWAAIASYL PQRTDNDIKN 60 YWNTHLKKKI KTFQAARSNY ITSSDSAGST IQERVHGGYP IEEIRNSGTS NSHILAHNSS 120 TYASSAENIS RLLEGWMRSS PSQTLSDEKL QHQMINNYDS FIMNQLNFNV EINSQLLLED 180 SVNGVDKTAL DSVFEEKKQF KMVASDLNKL ESQSQQPPMF MLEKWLLEEN TGLMDAFLEL 240 SSADCCSELM F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08810.1 | 3e-60 | MYB family protein |