PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548532.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 846aa    MW: 95769.9 Da    PI: 6.9481
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.4e-2113114199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       +++++ ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_028548532.1  13 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 104
                     99*****************************9666665.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_028548532.1 105 SQLLLGIRRA 114
                     7789999997 PP
2Auxin_resp113.61.8e-37139220182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++  rr++Gt++g+sdld ++W+ S+Wr++
  XP_028548532.1 139 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 220
                     79******************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    
MGLEQNKQPT QFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFTLQPPT QELGANDLHD  60
IVWTFRHIYR GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RDEKSQLLLG IRRATRQQPT  120
ISSSVLSSDS MHIGILAAAA HAVANSSPFT IFYNPRASPS EFVIPLAKYN KTFYMQVSLG  180
MRFRMMFETE ECGVRRYMGT ITGISDLDAT QWKTSQWRNI EVGWDELTAA DRPSRVSLWE  240
IEPVATPVYL SPPPFFRPKF PKQPGMPADD EAEAEIAFKS VIPCLGDDFG IKDTQSQLFP  300
GLSLVQWMAI QQNSRLSSST SQPTYIPSME ASIPSSLICN DPARLLSFQS HTSCFPNFQY  360
GFKLNPQSQQ LDQHQKPKKQ NSNEIQFPPP QQLAESQTHL KQRKHDNQQQ NLQQLNAQKQ  420
QNLTQALLLN EQLQPSAFQI QQQQVIQNQK SHSIQGKTLL NQTYLQPQVL LQSNSNFQQP  480
VELQQHSLLQ QQQQIEMQLI QKLQHQQVLS QLSAQVQSQL SQQLPLQNQL FHQQQNFQQL  540
PKNQIAGHSN PQLLARTPPP PSENDAPSCS TSPSSSCQVS MHGVPSKVLQ ELQNRHEMHV  600
IKETNHILCH NSMRDQLDSS SMNSFCLDGS LQEGFSHSPV CLDADLRHDS HSNLLTGTNS  660
DILLQNSMLS RGLGSGKDIQ NFLPSYCNQR DVDTDSTAAV SSQSFCLQDM PFNPGWSADA  720
CFNEVGMLNQ EMWANQPQRR RTYTKVHKRG SVGRSIDVSR YRGYDELRHD LACMFGIEGQ  780
LEDPHRTDWK VVYVDHENDI LLVGDDPWEE FVRCVQSIKI LSSLEVQQMS LAGDLPNVVM  840
HNQSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-168ARF family protein