PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028548531.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 864aa    MW: 97814.2 Da    PI: 6.8774
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028548531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.5e-2131132199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       +++++ ++l  +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_028548531.1  31 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 122
                     99*****************************9666665.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_028548531.1 123 SQLLLGIRRA 132
                     7789999997 PP
2Auxin_resp113.61.9e-37157238182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++  rr++Gt++g+sdld ++W+ S+Wr++
  XP_028548531.1 157 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 238
                     79******************************************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    
MTLQPVNKFD REALLASEMG LEQNKQPTQF FCKTLTASDT STHGGFSVPR RAAEKIFPPL  60
DFTLQPPTQE LGANDLHDIV WTFRHIYRGQ PKRHLLTTGW SVFVSTKRLF AGDSVLFIRD  120
EKSQLLLGIR RATRQQPTIS SSVLSSDSMH IGILAAAAHA VANSSPFTIF YNPRASPSEF  180
VIPLAKYNKT FYMQVSLGMR FRMMFETEEC GVRRYMGTIT GISDLDATQW KTSQWRNIEV  240
GWDELTAADR PSRVSLWEIE PVATPVYLSP PPFFRPKFPK QPGMPADDEA EAEIAFKSVI  300
PCLGDDFGIK DTQSQLFPGL SLVQWMAIQQ NSRLSSSTSQ PTYIPSMEAS IPSSLICNDP  360
ARLLSFQSHT SCFPNFQYGF KLNPQSQQLD QHQKPKKQNS NEIQFPPPQQ LAESQTHLKQ  420
RKHDNQQQNL QQLNAQKQQN LTQALLLNEQ LQPSAFQIQQ QQVIQNQKSH SIQGKTLLNQ  480
TYLQPQVLLQ SNSNFQQPVE LQQHSLLQQQ QQIEMQLIQK LQHQQVLSQL SAQVQSQLSQ  540
QLPLQNQLFH QQQNFQQLPK NQIAGHSNPQ LLARTPPPPS ENDAPSCSTS PSSSCQVSMH  600
GVPSKVLQEL QNRHEMHVIK ETNHILCHNS MRDQLDSSSM NSFCLDGSLQ EGFSHSPVCL  660
DADLRHDSHS NLLTGTNSDI LLQNSMLSRG LGSGKDIQNF LPSYCNQRDV DTDSTAAVSS  720
QSFCLQDMPF NPGWSADACF NEVGMLNQEM WANQPQRRRT YTKVHKRGSV GRSIDVSRYR  780
GYDELRHDLA CMFGIEGQLE DPHRTDWKVV YVDHENDILL VGDDPWEEFV RCVQSIKILS  840
SLEVQQMSLA GDLPNVVMHN QSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-180ARF family protein