PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028548530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ARF | ||||||||
Protein Properties | Length: 915aa MW: 103295 Da PI: 7.1214 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.2 | 4.9e-21 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_028548530.1 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTLQPPT-QELGANDLHDIVWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 218 99*****************************9666665.49************************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_028548530.1 219 SQLLLGIRRA 228 7789999997 PP | |||||||
2 | Auxin_resp | 113.5 | 2e-37 | 253 | 334 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 aaha++++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete++ rr++Gt++g+sdld ++W+ S+Wr++ XP_028548530.1 253 AAHAVANSSPFTIFYNPRASPSEFVIPLAKYNKTFYMQVSLGMRFRMMFETEECGVRRYMGTITGISDLDATQWKTSQWRNI 334 79******************************************************************************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 915 aa Download sequence |
MKVPPANGFP ANTSEGERKS MNSELWHACA GPLVSLPPAG SHVVYFPQGH SEQVAASMQK 60 KMDGIPTYPS LPSKLICVLQ NVTLHADTET DEVYAQMTLQ PVNKFDREAL LASEMGLEQN 120 KQPTQFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTL QPPTQELGAN DLHDIVWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDEKSQ LLLGIRRATR QQPTISSSVL 240 SSDSMHIGIL AAAAHAVANS SPFTIFYNPR ASPSEFVIPL AKYNKTFYMQ VSLGMRFRMM 300 FETEECGVRR YMGTITGISD LDATQWKTSQ WRNIEVGWDE LTAADRPSRV SLWEIEPVAT 360 PVYLSPPPFF RPKFPKQPGM PADDEAEAEI AFKSVIPCLG DDFGIKDTQS QLFPGLSLVQ 420 WMAIQQNSRL SSSTSQPTYI PSMEASIPSS LICNDPARLL SFQSHTSCFP NFQYGFKLNP 480 QSQQLDQHQK PKKQNSNEIQ FPPPQQLAES QTHLKQRKHD NQQQNLQQLN AQKQQNLTQA 540 LLLNEQLQPS AFQIQQQQVI QNQKSHSIQG KTLLNQTYLQ PQVLLQSNSN FQQPVELQQH 600 SLLQQQQQIE MQLIQKLQHQ QVLSQLSAQV QSQLSQQLPL QNQLFHQQQN FQQLPKNQIA 660 GHSNPQLLAR TPPPPSENDA PSCSTSPSSS CQVSMHGVPS KVLQELQNRH EMHVIKETNH 720 ILCHNRTNSD ILLQNSMLSR GLGSGKDIQN FLPSYCNQRD VDTDSTAAVS SQSFCLQDMP 780 FNPGWSADAC FNEVGMLNQE MWANQPQRRR TYTKVHKRGS VGRSIDVSRY RGYDELRHDL 840 ACMFGIEGQL EDPHRTDWKV VYVDHENDIL LVGDDPWEEF VRCVQSIKIL SSLEVQQMSL 900 AGDLPNVVMH NQSRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |