PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547936.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 803aa MW: 89625.5 Da PI: 5.8255

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.3	3.3e-19	621	718	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae + +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv++ngL+egDf+v++ ++ +++ XP_028547936.1 621 QKVLKQSDVGNLGRIVLPKKEAEINlpELDARDGISIEMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDiKCG 712 79******************888999999******7778***99777777777777.******************..677999 PP ..EEEE CS B3 91 elvvkv 96 +++++ XP_028547936.1 713 KYMIRG 718 888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MEEALDVPWP RFAGVDVASG LGSSGFGREI KWKVFGYSGW GLVWFEARLF WIEVSGLLVL 60 SEVCIFDLPF LDRDAGVAMW FKGIFVFMFF RFPSRSILSF LQGCGGRCPI STARRMGGSV 120 EGERELDGEA SSYNDNKVVF AGEEENQTPP PSPMPDMLID LDETAENLFF SDENDAFPSL 180 ADFPCLSSPS ASPSLSSAIS THHNTVPYFS IKSSSTTSSE TGPMQPPPPT MQASAATSED 240 PLIPIDAGFD IVEDETDIWE NCTEERTESI WEPSSSFSGE TATEEKTGFL CGGDDCSSED 300 LANVFLDWLK RNKDSISPED LRSIKLKRST IECAARRLGG GKQGRVQLLK LILAWVQNHH 360 LQKRRRRSRG SETIGRRDQE FYNYPPPPPP ISSSLPFPQG AANSNPNNID LYHEAVPCNS 420 WMPYTGEPSF QPTMPGYTSE AVPPNYYYND QANFSAEPWQ QGLSPAAVHY SPFGQTPRPP 480 PVAAHFFPVY YPGLMASATK EARKKRMARH RRSSSSLHQH RSQQQEQQNQ QQHSSDTMVV 540 GEEITSSAHS NVNKDNSSNW PFLSSLPAPD IPSLSPGVPT PSSATMAQTQ QENHLHRHAS 600 SAGDRRLEGM KAEKNYKFLL QKVLKQSDVG NLGRIVLPKK EAEINLPELD ARDGISIEME 660 DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRSNGLQEG DFIVIYSDIK CGKYMIRGVK 720 VRQPVEMIKG TSNHNSRKAT HQKKEKNNST MAVDDKGVIT CIYQLSLMDG RHDYDVWLVE 780 SMVAKGVHSN SHGDGVVNVM YFL

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MEEALDVPWP RFAGVDVASG LGSSGFGREI KWKVFGYSGW GLVWFEARLF WIEVSGLLVL  60
SEVCIFDLPF LDRDAGVAMW FKGIFVFMFF RFPSRSILSF LQGCGGRCPI STARRMGGSV  120
EGERELDGEA SSYNDNKVVF AGEEENQTPP PSPMPDMLID LDETAENLFF SDENDAFPSL  180
ADFPCLSSPS ASPSLSSAIS THHNTVPYFS IKSSSTTSSE TGPMQPPPPT MQASAATSED  240
PLIPIDAGFD IVEDETDIWE NCTEERTESI WEPSSSFSGE TATEEKTGFL CGGDDCSSED  300
LANVFLDWLK RNKDSISPED LRSIKLKRST IECAARRLGG GKQGRVQLLK LILAWVQNHH  360
LQKRRRRSRG SETIGRRDQE FYNYPPPPPP ISSSLPFPQG AANSNPNNID LYHEAVPCNS  420
WMPYTGEPSF QPTMPGYTSE AVPPNYYYND QANFSAEPWQ QGLSPAAVHY SPFGQTPRPP  480
PVAAHFFPVY YPGLMASATK EARKKRMARH RRSSSSLHQH RSQQQEQQNQ QQHSSDTMVV  540
GEEITSSAHS NVNKDNSSNW PFLSSLPAPD IPSLSPGVPT PSSATMAQTQ QENHLHRHAS  600
SAGDRRLEGM KAEKNYKFLL QKVLKQSDVG NLGRIVLPKK EAEINLPELD ARDGISIEME  660
DIGTSRVWNM RYRFWPNNKS RMYLLENTGD FVRSNGLQEG DFIVIYSDIK CGKYMIRGVK  720
VRQPVEMIKG TSNHNSRKAT HQKKEKNNST MAVDDKGVIT CIYQLSLMDG RHDYDVWLVE  780
SMVAKGVHSN SHGDGVVNVM YFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	7e-68	B3 family protein