PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547935.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 701aa MW: 77043 Da PI: 5.434

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.7e-19	551	646	3	95
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 kvl++sdv+++gr+vlpkk ae h +++++ ++ + +ed +r+W++++++ ++ks++y+l+ ++ +Fvk+ngL+egDf+v++ ++ ++++ XP_028547935.1 551 KVLKQSDVGSLGRIVLPKKEAEIHlpMLDSRDGIPIEMEDiGASRVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--SDaKSGK 642 99*****************999888889999***7777***99777777777777.******************..4448888 PP .EEE CS B3 92 lvvk 95 ++++ XP_028547935.1 643 YMIR 646 8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MGDFEAGEME FDGGEASSVN DKKVEELAGE EEKSMTPSQV EDMLIDMEES AQKLIFSDEE 60 DAFPSLADFG CLSSPSASAS YSSAASTLPK QSTSSSSSSS SFSSSSPWSF LFTPTETDGG 120 MHPAAASEDP LAPITDAGFD ILGDDIDLWE TCTDEPIEST WDSSRSFFPD ERNWAGGSGG 180 DQQPGNEEKL GFLSGGDDCS SEDLANVFLE WLKENKDLIS PEDLRSIKLK RSTIECAARR 240 LGGGKQGRVQ LLKLILDWVQ NHHLKKRRRR NRGSTRDQEL PTYAPPPLLP PPTIPLPPTH 300 IATTSNPNID FYQETVPCNS WMPYAGESSC PPVMPGYRGE APAVAVPSYH YYNDQAFSAH 360 PWQQLLSPAS TSSVIHYAPF GQQSPSPSLQ NFPVPVQVPV PVPVQVPVPV PVPVQAPPQY 420 LPMYYPGQTA SATKEARKKR MARHRKSSSL HPHRSQQQQN QQLQSSDNII VTEETSSSHS 480 SVNKDNASNF PSLPADIPSS PAATLAAVAP SPPTITPMHE ENYLHKRTTS PGERRRDGIK 540 SENNYKFLLR KVLKQSDVGS LGRIVLPKKE AEIHLPMLDS RDGIPIEMED IGASRVWNMR 600 YRFWPNNKSR MYLLENTGDF VKSNGLQEGD FIVIYSDAKS GKYMIRGVKV RQAVDMIKGT 660 SNRNPAGKAH QKKEKSSSTM AAVSQLLADD KGKSLCTDHQ E

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MGDFEAGEME FDGGEASSVN DKKVEELAGE EEKSMTPSQV EDMLIDMEES AQKLIFSDEE  60
DAFPSLADFG CLSSPSASAS YSSAASTLPK QSTSSSSSSS SFSSSSPWSF LFTPTETDGG  120
MHPAAASEDP LAPITDAGFD ILGDDIDLWE TCTDEPIEST WDSSRSFFPD ERNWAGGSGG  180
DQQPGNEEKL GFLSGGDDCS SEDLANVFLE WLKENKDLIS PEDLRSIKLK RSTIECAARR  240
LGGGKQGRVQ LLKLILDWVQ NHHLKKRRRR NRGSTRDQEL PTYAPPPLLP PPTIPLPPTH  300
IATTSNPNID FYQETVPCNS WMPYAGESSC PPVMPGYRGE APAVAVPSYH YYNDQAFSAH  360
PWQQLLSPAS TSSVIHYAPF GQQSPSPSLQ NFPVPVQVPV PVPVQVPVPV PVPVQAPPQY  420
LPMYYPGQTA SATKEARKKR MARHRKSSSL HPHRSQQQQN QQLQSSDNII VTEETSSSHS  480
SVNKDNASNF PSLPADIPSS PAATLAAVAP SPPTITPMHE ENYLHKRTTS PGERRRDGIK  540
SENNYKFLLR KVLKQSDVGS LGRIVLPKKE AEIHLPMLDS RDGIPIEMED IGASRVWNMR  600
YRFWPNNKSR MYLLENTGDF VKSNGLQEGD FIVIYSDAKS GKYMIRGVKV RQAVDMIKGT  660
SNRNPAGKAH QKKEKSSSTM AAVSQLLADD KGKSLCTDHQ E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-64	B3 family protein