PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028547606.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 395aa MW: 43979.8 Da PI: 10.7066

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028547606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	264	317	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k XP_028547606.1 264 KKLRLSKEQSRMLEESFRQNHTLNPKQKEALASRLRLRPRQVEVWFQNRRARTK 317 67789***********************************************98 PP
2	HD-ZIP_I/II	122.3	2.3e-39	264	351	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rlskeq+++LEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr + XP_028547606.1 264 KKLRLSKEQSRMLEESFRQNHTLNPKQKEALASRLRLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 351 9*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MASGDDPPRK SLASKFRRKK FTVTPSRATQ PDEGEGPSVP SVLPTPPPPP RANSSPRVSR 60 VRVNQIHRFY LHTSLATSLP RRVLTSTHAA PLYPYYPPTI ITGSRPVEVG AGGHEAATYK 120 RQYIEPESDK GKLNKLKRRS FPAKASLNSQ SFQRPTSSPD KPTQRHQRRR PAGDFPATPP 180 PCVVHVSVPQ DLELTMAIPG MSSPSGSGKF SVFNSYIEGG GSNVRDLDMN RPASGGEEEF 240 PASGEEGEDD EVGDGDGDGG HRPKKLRLSK EQSRMLEESF RQNHTLNPKQ KEALASRLRL 300 RPRQVEVWFQ NRRARTKLKQ TEMECEYLKR CFGSLTEENR RLQREVEELR ALRVAPPTVL 360 SPLTRQPMPA SALTMCPRCQ RLTMATHRRP PSAAA

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MASGDDPPRK SLASKFRRKK FTVTPSRATQ PDEGEGPSVP SVLPTPPPPP RANSSPRVSR  60
VRVNQIHRFY LHTSLATSLP RRVLTSTHAA PLYPYYPPTI ITGSRPVEVG AGGHEAATYK  120
RQYIEPESDK GKLNKLKRRS FPAKASLNSQ SFQRPTSSPD KPTQRHQRRR PAGDFPATPP  180
PCVVHVSVPQ DLELTMAIPG MSSPSGSGKF SVFNSYIEGG GSNVRDLDMN RPASGGEEEF  240
PASGEEGEDD EVGDGDGDGG HRPKKLRLSK EQSRMLEESF RQNHTLNPKQ KEALASRLRL  300
RPRQVEVWFQ NRRARTKLKQ TEMECEYLKR CFGSLTEENR RLQREVEELR ALRVAPPTVL  360
SPLTRQPMPA SALTMCPRCQ RLTMATHRRP PSAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	320	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-59	HD-ZIP family protein