PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020706049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 209aa MW: 23192.8 Da PI: 4.6512 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 39 | 91 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ +eq+++Le+ F ++ + e++++LA+ lgL+ rqV vWFqNrRa++k XP_020706049.1 39 KRRLGTEQVRALEQSFDVENRLEPERKARLAQDLGLQPRQVAVWFQNRRARWK 91 456889**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.8 | 1.1e-41 | 38 | 129 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl +eqv++LE+sF+ e++LeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++aLk++ydal+ + ++L++++++L ++l++ XP_020706049.1 38 KKRRLGTEQVRALEQSFDVENRLEPERKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDFSALKSRYDALRLDFDSLRRDNHSLVAQLAA 129 9**************************************************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MRHPAFFPCE EKSADMIFED DDDDVICCGG AANAAGAKKR RLGTEQVRAL EQSFDVENRL 60 EPERKARLAQ DLGLQPRQVA VWFQNRRARW KTKQLERDFS ALKSRYDALR LDFDSLRRDN 120 HSLVAQLAAL KSKLAGEGEI RQGEEKPQPA IGVDGACESD SSAVLTQDVF KVEEDWEETC 180 GAGFFADVHG PTMAWFSADL AVDGGGGGW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 69 | ERKARLA |
2 | 86 | 94 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.2 | 9e-47 | HD-ZIP family protein |