PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020705217.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 205aa    MW: 21591.1 Da    PI: 7.9688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020705217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-183483255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  XP_020705217.1 34 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 83
                    7*****998.**********9...336************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MVKSQSPSTS SSSSSSAAAA AAVSRGQKCR NQKQYKGVRM RSWGSWVSEI RAPNQKTRIW  60
LGSYSTPEAA ARAYDAALLC LKGSSASLNF PHSSPHHPPS SLLSPKSIQR IAAAAAAAVS  120
TPPPLSPPSF SSTSTADAAA AAAEEEMSSS PPPPATQPDI LVDFGAFQSP KCFVDPTWNP  180
FGFFAPSHQA EEFDEIGDLS LWSFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.12e-25ERF family protein