PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G77640.1 | ||||||||
Common Name | ERF013, T5M16.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26981.4 Da PI: 4.8302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv eIr p ++++r++lg++ tae Aa+a++aa ++l+g AT1G77640.1 41 KKYKGVRMRS-WGSWVTEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 91 59*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.71E-18 | 41 | 100 | No hit | No description |
SuperFamily | SSF54171 | 4.12E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 42 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-34 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.812 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 42 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVKQELKIQV TTSSSSLSHS SSSSSSSTSA LRHQSCKNKI KKYKGVRMRS WGSWVTEIRA 60 PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GPKANLNFPN ITTTSPFLMN IDEKTLLSPK 120 SIQKVAAQAA NSSSDHFTPP SDENDHDHDD GLDHHPSASS SAASSPPDDD HHNDDDGDLV 180 SLMESFVDYN EHVSLMDPSL YEFGHNEIFF TNGDPFDYSP QLHSSEATMD DFYDDVDIPL 240 WSFS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.17793 | 0.0 | flower| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145337680 | 0.0 | ||||
Genevisible | 259729_at | 0.0 | ||||
Expression Atlas | AT1G77640 | - | ||||
AtGenExpress | AT1G77640 | - | ||||
ATTED-II | AT1G77640 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00246 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G77640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G77640 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010704 | 0.0 | AC010704.6 Arabidopsis thaliana chromosome 1 BAC T5M16 genomic sequence, complete sequence. | |||
GenBank | AY560843 | 0.0 | AY560843.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77640) mRNA, complete cds. | |||
GenBank | BT012629 | 0.0 | BT012629.1 Arabidopsis thaliana At1g77640 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177887.1 | 1e-180 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9CAP4 | 0.0 | ERF13_ARATH; Ethylene-responsive transcription factor ERF013 | ||||
TrEMBL | A0A178WBA4 | 1e-177 | A0A178WBA4_ARATH; Uncharacterized protein | ||||
STRING | AT1G77640.1 | 1e-180 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2999 | 27 | 67 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G77640.1 |
Entrez Gene | 844099 |
iHOP | AT1G77640 |
wikigenes | AT1G77640 |