PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020705025.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 395aa    MW: 44383.2 Da    PI: 5.189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020705025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06526223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg+sF++  +L +H r+H
  XP_020705025.1  5 RCEVCGRSFPSTRSLAVHTRSH 26
                    7*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
METVRCEVCG RSFPSTRSLA VHTRSHAVLK SEEEPMCTYG LRENPRKSWR LKEKERDMLC  60
NNCGEGFGSW SSFFKHTKCH SETRRDVLSV EVDEDDEEDE EFEEKEEDLQ SNESYEEGED  120
GMQSESESQV TAVVFPARER RKRRRSPDLS PEDENEIKLG AFCLLMLSRG TESVTNSSDK  180
VSIVIEEEVE KQRNNSGFTA SDFEMNELKN VQSFQKYDFG MNELKKVQSF QTESEFSHKL  240
KKSKASPDKK HLNPVVAGLG KRSTYNCTLC NKSFHSYQAL GGHMASHKKI TDSSLSEIQG  300
TGELKIQNQR SKTTKNSHMC SICGRIFASG QALGGHKRSH LVPANNAAFA DAVQASPAVI  360
EIEQKSSILD SLDLNLPALD DEIYDNSSGS IEDCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145RKRRR
2141146RKRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-20C2H2 family protein