PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G02030.1
Common NameT7I23.3, ZAT1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 267aa    MW: 30181.8 Da    PI: 8.0923
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G02030.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026527123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC+ C ksF +   L  H+r+H
  AT1G02030.1  5 HKCKLCWKSFANGRALGGHMRSH 27
                 79********************9 PP
2zf-C2H212.20.00054160182123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C k+F++   L  H  +H
  AT1G02030.1 160 FECETCEKVFKSYQALGGHRASH 182
                  89***********9999998887 PP
3zf-C2H212.50.00045209231123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F++   L  H r+H
  AT1G02030.1 209 HECPICAKVFTSGQALGGHKRSH 231
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.4E-7428IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-4427IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.54E-9427No hitNo description
PROSITE profilePS5015710.512532IPR007087Zinc finger, C2H2
SMARTSM003550.02527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576673.54E-9155182No hitNo description
PfamPF139125.0E-11160184IPR007087Zinc finger, C2H2
SMARTSM003550.087160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681160187IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-5207234No hitNo description
PfamPF139126.2E-12208231IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.512209236IPR007087Zinc finger, C2H2
SMARTSM003550.041209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES  60
SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI GVQELSESCT EQEPMSSVSD  120
AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA  180
SHKKKIAETD QLGSDELKKK KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR  240
RSGIIISLID LNLPAPSEEE EMASSVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182202KKKIAETDQLGSDELKKKKKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183789120.0
Expression AtlasAT1G02030-
AtGenExpressAT1G02030-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G02030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G02030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
GenBankX986690.0X98669.1 A.thaliana zat1 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171705.10.0C2H2-like zinc finger protein
SwissprotQ390920.0ZAT1_ARATH; Zinc finger protein ZAT1
TrEMBLA0A178W5D70.0A0A178W5D7_ARATH; Uncharacterized protein
STRINGAT1G02030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Representative plantOGRP24041030
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Tsukagoshi H,Saijo T,Shibata D,Morikami A,Nakamura K
    Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor.
    Plant Physiol., 2005. 138(2): p. 675-85
    [PMID:15894743]
  4. Ciftci-Yilmaz S,Mittler R
    The zinc finger network of plants.
    Cell. Mol. Life Sci., 2008. 65(7-8): p. 1150-60
    [PMID:18193167]
  5. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  6. Meissner R,Michael AJ
    Isolation and characterisation of a diverse family of Arabidopsis two and three-fingered C2H2 zinc finger protein genes and cDNAs.
    Plant Mol. Biol., 1997. 33(4): p. 615-24
    [PMID:9132053]