PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020704947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LSD | ||||||||
Protein Properties | Length: 248aa MW: 26610.2 Da PI: 4.559 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.3 | 9.4e-12 | 172 | 195 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C lLsYPrG++ V+Ca+C+t XP_020704947.1 172 CGSCNELLSYPRGSKFVQCACCQT 195 ***********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MGSSPDSIPP GWEEAITSSP ETLPPGFENP STLSTPTSPP QENPSSSLPS PASPPLHENH 60 VNLTQRLPSP SPSTTPPQES QSHQLPPFLK SPQENRGPLP HPLWPLPQET PVPLSPSLPP 120 LPQEKLDAMP RPPLQSQDSQ GLLPSSKLPL GNMDSLNLPP PQSLPEMGQM VCGSCNELLS 180 YPRGSKFVQC ACCQTANFVL EALLESTQQA DDSQSLLGAV QACERMSIAI PLQKQPSSTP 240 KLRAFCFM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-12 | LSD family protein |