PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704450.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 906aa MW: 101601 Da PI: 7.7066

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.4e-06	236	256	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 e Cr fa+ G C++G+ C++ H XP_020704450.1 236 EACRAFAA-GNCRRGNECRYLH 256 68****.*********** PP
2	zf-CCCH	17	1e-05	395	414	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f++ G+C +G+ CkF H XP_020704450.1 395 PCKYFLQ-GHCIHGEGCKFLH 414 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence
MIQMEQKAFC WFNIEKCNNR TITEGSRQFK LFLMDEKMKR RIPKWDVAAE LHVDTVGHES 60 ALLEKVDDPC MNLTVVDSMN PIISMNLDGS DVNQSATQTG EEGNNNIIHS DDICEKTQIS 120 GQFDLEDDCK YGLKKQDWEP ASQDRNIAEH TENQDKSHKA VYDMPLDPEE RHQSTRNMSP 180 VDDRRRLHRK RSRSRSLSRD SRSRSWSANR GKSPSYVSKQ GSERWTDKGR MRGMNEACRA 240 FAAGNCRRGN ECRYLHEDGC LRQIDRHHDT GLTDGRGIRL ERERQLVYGS NETLTDTEER 300 NKYSRDKLSG MHEEHHEDGS AANIQHPSYR SNERCFDFIR GRCFRGEACR YIHDDASSDG 360 GWSVKDEFSG RVHDRRGESA SFTRRIHHQR LSDIPCKYFL QGHCIHGEGC KFLHQPGPLN 420 IPLDRSLDGS QHSFVSAGPA GNSTSTNASE QQHQTARFSS TNPHRENLRG VGDTQPIDKQ 480 KFSKRSLSQD GHKRPHSSEQ QATTSEVCEE LSVNNPLPTT LIACQNADSR GQNQSAPKIL 540 HAQNHFAPPI PSKGQMLQVM HSHYQNGKNQ FAALEKPPDA HSFNANIQNR SANPSSHQLN 600 PQNLDSRAQV QKNISILSNS GSNFNHNGQI QQNGPLILVS HSGLGQQEIA GDSQNVLPQN 660 VQNQVQNIPA YISNGQNNLI VVPQPSLNPQ ILNSDDKNCQ LTMKKQLPHD TDSSEVKPSQ 720 FNSDNSITQK VVTIEQAAKI TDLSASLAQF FGSAAQNSQS SAAITPQPFL NPNSLASFAT 780 PIAPPLPTEV DTKQIDDKTE AHGTNGEAEN GKDVDTKKIK EAKEIRLFKC ALVEFVKDAL 840 KPKWKEGQLS KEAYKTIVKK VVEKVCGSLQ GPNVPQTQEK IDLYLLNCKA KLTKLVQAYV 900 EKFVNS

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence

MIQMEQKAFC WFNIEKCNNR TITEGSRQFK LFLMDEKMKR RIPKWDVAAE LHVDTVGHES  60
ALLEKVDDPC MNLTVVDSMN PIISMNLDGS DVNQSATQTG EEGNNNIIHS DDICEKTQIS  120
GQFDLEDDCK YGLKKQDWEP ASQDRNIAEH TENQDKSHKA VYDMPLDPEE RHQSTRNMSP  180
VDDRRRLHRK RSRSRSLSRD SRSRSWSANR GKSPSYVSKQ GSERWTDKGR MRGMNEACRA  240
FAAGNCRRGN ECRYLHEDGC LRQIDRHHDT GLTDGRGIRL ERERQLVYGS NETLTDTEER  300
NKYSRDKLSG MHEEHHEDGS AANIQHPSYR SNERCFDFIR GRCFRGEACR YIHDDASSDG  360
GWSVKDEFSG RVHDRRGESA SFTRRIHHQR LSDIPCKYFL QGHCIHGEGC KFLHQPGPLN  420
IPLDRSLDGS QHSFVSAGPA GNSTSTNASE QQHQTARFSS TNPHRENLRG VGDTQPIDKQ  480
KFSKRSLSQD GHKRPHSSEQ QATTSEVCEE LSVNNPLPTT LIACQNADSR GQNQSAPKIL  540
HAQNHFAPPI PSKGQMLQVM HSHYQNGKNQ FAALEKPPDA HSFNANIQNR SANPSSHQLN  600
PQNLDSRAQV QKNISILSNS GSNFNHNGQI QQNGPLILVS HSGLGQQEIA GDSQNVLPQN  660
VQNQVQNIPA YISNGQNNLI VVPQPSLNPQ ILNSDDKNCQ LTMKKQLPHD TDSSEVKPSQ  720
FNSDNSITQK VVTIEQAAKI TDLSASLAQF FGSAAQNSQS SAAITPQPFL NPNSLASFAT  780
PIAPPLPTEV DTKQIDDKTE AHGTNGEAEN GKDVDTKKIK EAKEIRLFKC ALVEFVKDAL  840
KPKWKEGQLS KEAYKTIVKK VVEKVCGSLQ GPNVPQTQEK IDLYLLNCKA KLTKLVQAYV  900
EKFVNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-17	C3H family protein