PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704151.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 297aa    MW: 33673.8 Da    PI: 4.9921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704151.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.9e-142772146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+eEd+ l d+vk+ G ++W++I +   + Rt+k+c++rw +
   XP_020704151.2 27 KGPWTAEEDKVLMDYVKKNGARDWSSIQSNGLLPRTGKSCRLRWVN 72
                     79*************************9976667**********87 PP
2Myb_DNA-binding37.65e-1283123345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T eE+   +d  +++G++ W++Ia  +  gRt++++k++w 
   XP_020704151.2  83 KFTLEEERTVIDMQARFGNK-WARIATFLE-GRTDNDVKNFWS 123
                      79******************.*********.***********5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MHSGGSGDCK KLPATETPSP TTATMKKGPW TAEEDKVLMD YVKKNGARDW SSIQSNGLLP  60
RTGKSCRLRW VNKLRPNLKS GCKFTLEEER TVIDMQARFG NKWARIATFL EGRTDNDVKN  120
FWSTRQKRLA RLLQTPLPVR SQRRQKNSPV SSQVPDSEGV LLPNENSPSL DLIQITKNYS  180
NDQYSYAPYV EGQDSTKIME SLNLDAATTL LEPAIIRDSP QLSIDHSLFD LPPLAEEQPG  240
EISFHDHFIL EENFDPMELP ITPPTTFFDD VDFDDHYKQV EHPGTLESIF DDKLFGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-60MYB family protein