PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703886.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 227aa    MW: 24058.9 Da    PI: 4.9553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000351081451254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +r+ ++++ L++l+ +      +K + a++L +A  YI+ L
  XP_020703886.1 108 RKERLGDRIAALQQLVSPF-----GKSDTASVLHEALAYIRFL 145
                     7788999*********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEIERREEEG GEEEEGLVEL LLSSPSCTNY SSSMFCYGCG GGQEDGAQRS SDSSSLSTLS  60
SSPSSNAIAT CSKASIKEEE INGCMRFSGG SKKAKKDGAG SKGTIKVRKE RLGDRIAALQ  120
QLVSPFGKSD TASVLHEALA YIRFLHEQVQ VLSSPYLLQP LPTSGSLQGK EEGGMKLEDL  180
QSRGLCLVPL TCTLQVPNTN GADLWAPSNS NFSITKPTTS SPPNPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-42bHLH family protein