PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703637.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 536aa    MW: 58901.1 Da    PI: 8.1786
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.43.8e-2855134186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe++aL+++r++m+  ++++ lk+plWe+vs+k+ e+g+ers+k+Ckek+en+ k+yk++ke + +      +t+++f+qle
  XP_020703637.1  55 RWPRQETMALLKIRSDMDPLFQEATLKAPLWEQVSRKLTEEGYERSAKKCKEKFENVFKYYKRTKEARAG------KTYRFFSQLE 134
                     8******************************************************************998......4799999998 PP
2trihelix104.29.3e-33389474187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+ev+aLi++r+ me+++ ++  k+plWee+s+ m + g+ rs+k+Ckekwen+nk+ykk+ke++k+r +e+ +tcpyf+ql+a
  XP_020703637.1 389 RWPKSEVHALINLRSGMESKYLDSIPKGPLWEEISACMGRLGYDRSAKRCKEKWENINKYYKKVKESNKNR-PEDAKTCPYFHQLDA 474
                     8********************************************************************98.99999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MQEEEGPPPS DQLAAPISVR MPPLGLGSSS ASAGNGFDEI AVERDSGCGS PAGNRWPRQE  60
TMALLKIRSD MDPLFQEATL KAPLWEQVSR KLTEEGYERS AKKCKEKFEN VFKYYKRTKE  120
ARAGKTYRFF SQLEALRSSS SSSVAGAPPL PPTIANSSAT MVNIEASSSG AAAPSPHTLL  180
SVTVRPPPPP AAGPITTTTI PPPPTDAADG PSSSSNTSSY SGTESEDEDG GEASRKRKRE  240
RREAPEGSGK MMAFFEGLIK EVMDQQETML QRFLEAIERR EQNRMIREEA WRRQEKSRIS  300
REHELVAQER AAAASRDDAI ISFLQKLTGQ KIPIPPPPQP PETTVDPAEE TPTSPPPPPR  360
PEDPDQPPKE TTLGSSSRRT IEAPILSSRW PKSEVHALIN LRSGMESKYL DSIPKGPLWE  420
EISACMGRLG YDRSAKRCKE KWENINKYYK KVKESNKNRP EDAKTCPYFH QLDALYRAKI  480
LGGSSSAGTA GQTLSTDDHQ LAISSPTAAI IKQQDDRMSF FEQGSSSASL VKKKTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-56Trihelix family protein