PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703548.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 269aa    MW: 30747.6 Da    PI: 6.3458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.91.1e-1729111286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W++ e+ +Li+a++e++++++rg l++++We+v+  +  + g++r   s +qC++k+e+l+kry+ ++ +  +      s +p+f++++
  XP_020703548.1  29 WSDLETTHLIDAYEEKWNSSKRGPLRAQQWEDVAVEVaGRCGLTRpskSGTQCRHKIEKLRKRYRSERLRPVR------SLWPFFERID 111
                     **********************************9997566776555599***************99888776......589***9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MAADEPLERD PATPASVAGL SKPAPGSTWS DLETTHLIDA YEEKWNSSKR GPLRAQQWED  60
VAVEVAGRCG LTRPSKSGTQ CRHKIEKLRK RYRSERLRPV RSLWPFFERI DRMERGPLPI  120
SARLPPPAPA SSSSCSDFKP HLSNKRSVNG ILGEAGLRES ARVSRNVRPR KRRVEEEDEE  180
DDDEENEEEA DEGRDAGLGG LTELAAELRR FGEGYVRMER KRIEMMREKE REWMEMESRR  240
LEMVMEAQRG LVETIAGAFW KKAKNSDDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-23Trihelix family protein