PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703374.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 366aa MW: 41114.8 Da PI: 6.428

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703374.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	121	209	8	97
-HHHHT.T-..EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlks.gr..lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 s ++++ + l+lp + e + + ++ +l ++d+++++W++ + +++++ ++vlt+GW +F ++++L +gD+vvF + + ++ +v+++ XP_020703374.2 121 SETNRKnKSlvLTLPSRAHEVFRNL--KDDDLDIYDLNNQRWRFGHMVSGSPPMHVLTSGWHHFFSSKNLVAGDVVVFVR--DADGIIFVGFR 209 3333332330156666665444333..4558*************99*****************************4..45665666666 PP
2	Auxin_resp	25.4	6.3e-10	264	328	15	83
Auxin_resp 15 YnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ++P ++ + +vvk e ve+a++v++ GmR++ + e+ d + l Gtv+++s + + +Wr+L+ XP_020703374.2 264 FYPDSKLPVYVVKKEVVETAMSVQWKRGMRVQKKWEMADGFTCWLHGTVRALSP----ESIKNPWRMLE 328 89999*********************************99999**99988....44577899985 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MPSKIDKGKA LSAAGESPVI DRAIWKPLAF SSPNFPSAGS DVYYFSEGHA EQCGSRLPKY 60 LFPSFAFSCH LAAVNLHADP TTEQVFATFS LTTDFSSPAT TTAKTFSGGG VTSVVKTLSK 120 SETNRKNKSL VLTLPSRAHE VFRNLKDDDL DIYDLNNQRW RFGHMVSGSP PMHVLTSGWH 180 HFFSSKNLVA GDVVVFVRDA DGIIFVGFRR CDSDECDAIA MNVDAASSSS TTKTLRKKRE 240 EPEMVIEAYR WAVEYGEGMV EGRFYPDSKL PVYVVKKEVV ETAMSVQWKR GMRVQKKWEM 300 ADGFTCWLHG TVRALSPESI KNPWRMLEVI WDKTTCKRTM ENPWDVEPVQ ALITEMPEEE 360 EILILD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MPSKIDKGKA LSAAGESPVI DRAIWKPLAF SSPNFPSAGS DVYYFSEGHA EQCGSRLPKY  60
LFPSFAFSCH LAAVNLHADP TTEQVFATFS LTTDFSSPAT TTAKTFSGGG VTSVVKTLSK  120
SETNRKNKSL VLTLPSRAHE VFRNLKDDDL DIYDLNNQRW RFGHMVSGSP PMHVLTSGWH  180
HFFSSKNLVA GDVVVFVRDA DGIIFVGFRR CDSDECDAIA MNVDAASSSS TTKTLRKKRE  240
EPEMVIEAYR WAVEYGEGMV EGRFYPDSKL PVYVVKKEVV ETAMSVQWKR GMRVQKKWEM  300
ADGFTCWLHG TVRALSPESI KNPWRMLEVI WDKTTCKRTM ENPWDVEPVQ ALITEMPEEE  360
EILILD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	5e-34	ARF family protein