PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702885.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 726aa MW: 83836.7 Da PI: 8.2404

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.8e-20	77	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GF +r+++sk + + ++kr++vC + g++ ++k+++ k++r+++++r++C+a++ +kk+ ++w+v+++++ HnHel XP_020702885.1 77 DYYKNFARKNGFAIRRERSKGNpAHPLGVYKRELVCHRAGQSLPRKTAELKRQRNKKSSRCKCEAQMIIKKNVskgISRWVVIHFSNVHNHELL 170 59***************999766667****************99999**************98756689***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MTKSSSRNGC LTQRRQCPCG VEPCFVRVEV DEDDLSSDPL VEASIPEGPS QFSSEIMSVD 60 SPPHVGRSFR TDDEAQDYYK NFARKNGFAI RRERSKGNPA HPLGVYKREL VCHRAGQSLP 120 RKTAELKRQR NKKSSRCKCE AQMIIKKNVS KGISRWVVIH FSNVHNHELL DSEEVRHLPA 180 YRNISSVDRE NILSLAKRGF TVNHIMRALE TEKRVKPGQL TFTERDLRNF LQASKNINKE 240 NEGAELLKAC KALKDKHLDF RFEFTLDESD RVEHIAWSYP DSIQAYRLFG DIVVFDTSYN 300 LYAYDRLLGV WFGLDNYGNA IFFGCVLLQD AKPHSHRWAL QSFVRLMDGK FPRTVLTDLD 360 MGIKDAMMSE LPSAKHVFAI WHLTSKLSSW FSALLGSQFE KFVSEFLRVC NLDSIVEFEL 420 QWNQMVLDFG LDSDRHIAIL SFHREYWALP YLRGCFLGGL MRSGLPSSIK SFFKGPLNSQ 480 TRLKDFFEQV GIAIDFLNQA GEEATLRQNY QNIKSKTCMP IEEQALHILT PYAFDMFQRE 540 VIESMQYAVY ETARENYLVR HRLMVDGGHI VRCIQPEDEI QCSCQEFESS GILCRHTLRV 600 FSLKNYFMLP NRYLLIRWRR ESSLFPRSSG YKFRSQALRS LASIIIQESS ITKDRFDYVQ 660 WHMSKLLTHV RDMPTVDETS LDMEPSSVYD AAANFVPKRT TARGTPKKLK DVAQAEVEVN 720 FDMAES

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MTKSSSRNGC LTQRRQCPCG VEPCFVRVEV DEDDLSSDPL VEASIPEGPS QFSSEIMSVD  60
SPPHVGRSFR TDDEAQDYYK NFARKNGFAI RRERSKGNPA HPLGVYKREL VCHRAGQSLP  120
RKTAELKRQR NKKSSRCKCE AQMIIKKNVS KGISRWVVIH FSNVHNHELL DSEEVRHLPA  180
YRNISSVDRE NILSLAKRGF TVNHIMRALE TEKRVKPGQL TFTERDLRNF LQASKNINKE  240
NEGAELLKAC KALKDKHLDF RFEFTLDESD RVEHIAWSYP DSIQAYRLFG DIVVFDTSYN  300
LYAYDRLLGV WFGLDNYGNA IFFGCVLLQD AKPHSHRWAL QSFVRLMDGK FPRTVLTDLD  360
MGIKDAMMSE LPSAKHVFAI WHLTSKLSSW FSALLGSQFE KFVSEFLRVC NLDSIVEFEL  420
QWNQMVLDFG LDSDRHIAIL SFHREYWALP YLRGCFLGGL MRSGLPSSIK SFFKGPLNSQ  480
TRLKDFFEQV GIAIDFLNQA GEEATLRQNY QNIKSKTCMP IEEQALHILT PYAFDMFQRE  540
VIESMQYAVY ETARENYLVR HRLMVDGGHI VRCIQPEDEI QCSCQEFESS GILCRHTLRV  600
FSLKNYFMLP NRYLLIRWRR ESSLFPRSSG YKFRSQALRS LASIIIQESS ITKDRFDYVQ  660
WHMSKLLTHV RDMPTVDETS LDMEPSSVYD AAANFVPKRT TARGTPKKLK DVAQAEVEVN  720
FDMAES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein