PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702428.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 383aa MW: 44308.3 Da PI: 9.9208

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.7	1.5e-09	330	370	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE el++++++ +G++ Wk a ++g +++ ++k+ w+ XP_020702428.1 330 KWKPEELELIKRYHAAHGPK-WKEMADMLG--KSRVHVKDAWRR 370 8***************99.999998..9******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MSCSENRATD GGFKEGRKYK EEHKKEKKKS NQKGITEFNS LKNASDEEGA NLEDEIILGG 60 PMQIEKDKKR HKKKKGNYKE NENSTTFTEN CNWDEAKEQD KKRKREGYFL EHELDKGSSK 120 KMAKDASKEA YKVISGGNAE ELLSRAHLSN KDKRKEKEKE YLASCTELTP AMTTRKEKGD 180 QRSTSSTTKN FEKSKSDMNT LNTGKGCSIN ESYNCELKKD TKIGKKEVSF SDKVEFPLAQ 240 FINENLGPDN LVWGKRFTPE EDELIRNAVM DYIEANQLGE QGLRKVLHSR DYRREVKGCW 300 KVIAAALPWR PSINVSMRAR ILFERSEERK WKPEELELIK RYHAAHGPKW KEMADMLGKS 360 RVHVKDAWRR IRLPNRKLGM LAC

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MSCSENRATD GGFKEGRKYK EEHKKEKKKS NQKGITEFNS LKNASDEEGA NLEDEIILGG  60
PMQIEKDKKR HKKKKGNYKE NENSTTFTEN CNWDEAKEQD KKRKREGYFL EHELDKGSSK  120
KMAKDASKEA YKVISGGNAE ELLSRAHLSN KDKRKEKEKE YLASCTELTP AMTTRKEKGD  180
QRSTSSTTKN FEKSKSDMNT LNTGKGCSIN ESYNCELKKD TKIGKKEVSF SDKVEFPLAQ  240
FINENLGPDN LVWGKRFTPE EDELIRNAVM DYIEANQLGE QGLRKVLHSR DYRREVKGCW  300
KVIAAALPWR PSINVSMRAR ILFERSEERK WKPEELELIK RYHAAHGPKW KEMADMLGKS  360
RVHVKDAWRR IRLPNRKLGM LAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	104	KRHKKKKGNYKENENSTTFTENCNWDEAKEQDKKRK
2	72	107	KRHKKKKGNYKENENSTTFTENCNWDEAKEQDKKRK
3	101	124	KKRKREGYFLEHELDKGSSKKMAK
4	102	125	KKRKREGYFLEHELDKGSSKKMAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	3e-37	MYB_related family protein