PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702124.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 842aa MW: 96650 Da PI: 6.7434

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.1	1e-16	91	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +vGF v ++ks+ s ++g + + + Csk g+ + + r++ +t+C+a++ vk++ dg +v + +leHnH+++ XP_020702124.1 91 NFYKQYALRVGFGVAVKKSSFS-KSGVCRRLILGCSKGGRGRADACY-----LARQTAKTNCEAMIAVKLWGDGLLHVVDAKLEHNHPVS 174 6***************9999.7888***********99998.....889999***************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence
MTTNESAMEA PFVADEIDEM KDVEFNDMVP SDSNDPQEMM KDLSKKDEAK EMVTTTDIAD 60 DEEKVDKVGQ NSDDKIPGIG MAFRTYEEAS NFYKQYALRV GFGVAVKKSS FSKSGVCRRL 120 ILGCSKGGRG RADACYLARQ TAKTNCEAMI AVKLWGDGLL HVVDAKLEHN HPVSPSTAQF 180 LRCYQKMAHT MNIVQQGGHR NSHVVDKDCV SMTEIGRLKL GEGDDEAIHQ FFARMQNKNP 240 KFFYSVDLDQ NGRMRNLFWA DARSRAANRY FGDVVAFDST CLTEKQDLPL VSFVGVNHHG 300 QSVLLGCGLL SNETVETFVW FFKTWLTCMM NCYPNAIITD LCKPIQDAVA EVFQGTRHRL 360 CLHNVMKKVP EKVRGHEELK AIKKELKKLV YDSLRAYEFE HEWKKMIKKF GLEGNDWLTE 420 LYENRHSWVP LFLKDAFWAG MSVAQRGESL STYFDGFVYP RTTIKHFFSK YETIIQSKCK 480 KEAQADSESF HKTPLIASKF YMEEQLSKLY TINMFQKFQD ELKATMYCHA SPMKIDGSIQ 540 IFEVKECSYI ENGKRTESKD HEVFYNAEEL AVQCICGFFQ FHGILCRHSL SVFKLQQIFE 600 IPSHYILNRW KKDFKRLHTL ANYADDIVPD SLVDRHDYLS MRFLQLVEVG FLSEDRYQLA 660 VKLIRELEKF LLDEPGCRDR QSRLLSFETQ PGQCVQDLLA SRFVISECNK SQSSLQAKRR 720 GRPQKKLEES NIEALVRANK EQDFLRSSLI QSENPVLQAA STSLHQDAHI GSQGGIDLME 780 EVNQNELSFG PHFGMHVNQD QIVGQVQYEQ QGLSTPTRMP WLYHQLYQED QIPKAPSGQR 840 NG

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence

MTTNESAMEA PFVADEIDEM KDVEFNDMVP SDSNDPQEMM KDLSKKDEAK EMVTTTDIAD  60
DEEKVDKVGQ NSDDKIPGIG MAFRTYEEAS NFYKQYALRV GFGVAVKKSS FSKSGVCRRL  120
ILGCSKGGRG RADACYLARQ TAKTNCEAMI AVKLWGDGLL HVVDAKLEHN HPVSPSTAQF  180
LRCYQKMAHT MNIVQQGGHR NSHVVDKDCV SMTEIGRLKL GEGDDEAIHQ FFARMQNKNP  240
KFFYSVDLDQ NGRMRNLFWA DARSRAANRY FGDVVAFDST CLTEKQDLPL VSFVGVNHHG  300
QSVLLGCGLL SNETVETFVW FFKTWLTCMM NCYPNAIITD LCKPIQDAVA EVFQGTRHRL  360
CLHNVMKKVP EKVRGHEELK AIKKELKKLV YDSLRAYEFE HEWKKMIKKF GLEGNDWLTE  420
LYENRHSWVP LFLKDAFWAG MSVAQRGESL STYFDGFVYP RTTIKHFFSK YETIIQSKCK  480
KEAQADSESF HKTPLIASKF YMEEQLSKLY TINMFQKFQD ELKATMYCHA SPMKIDGSIQ  540
IFEVKECSYI ENGKRTESKD HEVFYNAEEL AVQCICGFFQ FHGILCRHSL SVFKLQQIFE  600
IPSHYILNRW KKDFKRLHTL ANYADDIVPD SLVDRHDYLS MRFLQLVEVG FLSEDRYQLA  660
VKLIRELEKF LLDEPGCRDR QSRLLSFETQ PGQCVQDLLA SRFVISECNK SQSSLQAKRR  720
GRPQKKLEES NIEALVRANK EQDFLRSSLI QSENPVLQAA STSLHQDAHI GSQGGIDLME  780
EVNQNELSFG PHFGMHVNQD QIVGQVQYEQ QGLSTPTRMP WLYHQLYQED QIPKAPSGQR  840
NG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-136	FAR1 family protein