PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020700958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | ARF | ||||||||
Protein Properties | Length: 699aa MW: 77634.6 Da PI: 7.1372 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 139 | 240 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ ++++ s++l+ +d++ +W++++iyr++++r++lt+GW+ F + ++L +gD v+F + +++ XP_020700958.1 139 FCKTLTASDTSTHGGFSVPRRAAEDCfppldHKQQRPSQELVAKDLHDVEWKFRHIYRGQPRRHLLTTGWSTFIHKKKLVAGDAVLFL--RGDDG 231 99****************************955566778*************************************************..34899 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 el+++++r+ XP_020700958.1 232 ELRLGIRRA 240 99****997 PP | |||||||
2 | Auxin_resp | 112.4 | 4.4e-37 | 268 | 346 | 4 | 82 |
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +st+s+F+v YnPr+ +seF+v+++k+ k+++ ++svG+Rfkm+fe+ed++err+sG+++gv dldp+rWp+SkWr+ XP_020700958.1 268 TVSTGSIFQVKYNPRVNQSEFIVPYWKFTKSCDYSFSVGTRFKMRFESEDAAERRFSGLITGVGDLDPIRWPGSKWRCF 346 689**************************************************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence |
MGIDLNTVDQ EQNDESAEHS AADAGSVCLE LWYACAGPLI SLPRKGSVVV YLPQGHLEVL 60 GKGGNGMMMR CDVPPHVFCR VVDVQLRAEA VTDVVYAQLS LVAESKEAMK QFQNGKADKE 120 GEELDEMNSG DKSPTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDH KQQRPSQELV 180 AKDLHDVEWK FRHIYRGQPR RHLLTTGWST FIHKKKLVAG DAVLFLRGDD GELRLGIRRA 240 SQLKGNLFHQ TPASLNLEIG TLSSLKSTVS TGSIFQVKYN PRVNQSEFIV PYWKFTKSCD 300 YSFSVGTRFK MRFESEDAAE RRFSGLITGV GDLDPIRWPG SKWRCFVVRW DGADVDGGRP 360 NRVSPWEIEP TGSLSGSNNL YLPCSKRIRI GISSMNAGYT YPSGGGYSDL EETARFKKVL 420 QGQEIFNNKT RDVGDATLSH TLETSNHHFP EMRRCFANPE SSLLVRSGSN NRVPVGNSDF 480 FYQCRDFEEL VRFPKVLQGQ EIVPVRPTYP GIGVECLRET KSKVLESSYA GTCYAPLHGY 540 RTTMLPCAAS AQASPSSVLM FQQATSQLPF SHSYYGINEH EKAEDCDMSG TLSSVDSSSQ 600 SHQPGNCISR DHCESDLNFT KTFEKNDPIL PCGGNGFMLF GFPLIAKIPV ENAISGLLKN 660 PSLLEGKHEL SFSNRRPQLA KESASWLFKS ARVNLQEFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-167 | ARF family protein |