PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020700438.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29639.8 Da PI: 9.8735 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.9e-19 | 47 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll ++vk++G g+W++I + +g+ R++k+c++rw ++l XP_020700438.2 47 KGPWSAEEDALLMEYVKKHGEGNWNAIQKNIGLQRCGKSCRLRWANHL 94 79******************************************9996 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 100 | 143 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++++ G++ W+ a +++ gRt++++k++w++ XP_020700438.2 100 KGSFTQEEENLIIKYHAEIGNK-WAQMATYLP-GRTDNEIKNFWNT 143 799*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MVHKDVPQPE VKIKYPVRVK EEPILGLSDS SSPGGGDDDD APQSLKKGPW SAEEDALLME 60 YVKKHGEGNW NAIQKNIGLQ RCGKSCRLRW ANHLRPNLIK GSFTQEEENL IIKYHAEIGN 120 KWAQMATYLP GRTDNEIKNF WNTRLKRRQR AGVPLYPPEI QAQIAMKKRQ RAFMLMQNQV 180 QRPINIGNAG NDETNYLLRN FDPSLPWQQR QASTFPFKTE HLSTKWYPNY ISDHQKVSPQ 240 PMSLAMGQAN NALIDVMF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 6e-67 | MYB family protein |