PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020700227.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 522aa MW: 57580.8 Da PI: 8.5643

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020700227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	80.3	1.9e-25	105	206	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvltpsd+++ g l++p+ +ae++ +++++ + t+ + d +g+sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++ XP_020700227.1 105 FAKVLTPSDANNGGGLSVPRFCAESMfppldhMMDPPFQ-TIYVLDVHGKSWKFRHIYRGTPRRHLLTSGWSDFVNTKKLISGDTVVFI--RNLA 196 89*******************999*96676664.9********************************************..5689 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ XP_020700227.1 197 GELFVGIRRT 206 99***996 PP
2	Auxin_resp	67	6.6e-23	241	324	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++Fev+++P ++ Fvv e ve+a+ v++ +GmR+kma+e+ dss++++ +Gt++ + rW +S Wr+L+ XP_020700227.1 241 AVRLADMGKPFEVLFYPMVGLLAFVVAKEMVEAAMVVPWGPGMRIKMAVESGDSSRTTWlQGTISCAAVPERGRWARSLWRMLE 324 57789999**************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MLSSRLSRSL DYSIWKACAG GSTRLPAIGS GVFYFPEGHA EHATSPPDFS SLLRFPSFFQ 60 CNVTGISLLA NQHSDEVYAQ ISLDPRPSNA ATAMWPDDES SVSSFAKVLT PSDANNGGGL 120 SVPRFCAESM FPPLDHMMDP PFQTIYVLDV HGKSWKFRHI YRGTPRRHLL TSGWSDFVNT 180 KKLISGDTVV FIRNLAGELF VGIRRTGRSY GGQISLEGGG FKDEVFLRNR GRVLPESVIE 240 AVRLADMGKP FEVLFYPMVG LLAFVVAKEM VEAAMVVPWG PGMRIKMAVE SGDSSRTTWL 300 QGTISCAAVP ERGRWARSLW RMLEIKWDEQ DVLQGLRAVN PWQVELISSV LPFHVMKKLK 360 LTEGLKVLVE GHGNMTFSIT GFGGTGMQSL IPAPYNISES PSGKQGARHI FSSLSSSLVP 420 RSTNQVLSDN IHGFDNAYYP NVSRSDGITQ VVKEVIHHNG VEIASACKTT MKSRKGSIQL 480 FGQVIETEQL DDRNVSTEFP LSFTHKQLLD KQIRVSAVGE CK

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MLSSRLSRSL DYSIWKACAG GSTRLPAIGS GVFYFPEGHA EHATSPPDFS SLLRFPSFFQ  60
CNVTGISLLA NQHSDEVYAQ ISLDPRPSNA ATAMWPDDES SVSSFAKVLT PSDANNGGGL  120
SVPRFCAESM FPPLDHMMDP PFQTIYVLDV HGKSWKFRHI YRGTPRRHLL TSGWSDFVNT  180
KKLISGDTVV FIRNLAGELF VGIRRTGRSY GGQISLEGGG FKDEVFLRNR GRVLPESVIE  240
AVRLADMGKP FEVLFYPMVG LLAFVVAKEM VEAAMVVPWG PGMRIKMAVE SGDSSRTTWL  300
QGTISCAAVP ERGRWARSLW RMLEIKWDEQ DVLQGLRAVN PWQVELISSV LPFHVMKKLK  360
LTEGLKVLVE GHGNMTFSIT GFGGTGMQSL IPAPYNISES PSGKQGARHI FSSLSSSLVP  420
RSTNQVLSDN IHGFDNAYYP NVSRSDGITQ VVKEVIHHNG VEIASACKTT MKSRKGSIQL  480
FGQVIETEQL DDRNVSTEFP LSFTHKQLLD KQIRVSAVGE CK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-110	ARF family protein