PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700072.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Nin-like
Protein Properties Length: 264aa    MW: 30870.4 Da    PI: 6.1797
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.12.6e-26139187452
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +i+le++++yF++pi++AA e++++lTvLK++CR +GI RWPhRk+ksl
  XP_020700072.1 139 DIELEEIRAYFHMPITKAAMEMNIGLTVLKKRCRDLGITRWPHRKLKSL 187
                     799********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MDIDTDHTDI QSFISWPFFE DPSIDQSLFN LPYFEDNSFT DFAPPFFNDS YDLLPLPESL  60
EHKAIPLSCL PPLPDHQKLH CSEEIMKYYT EAMPLSAVAI SPQTLIEENT EGEEIMRMEL  120
KSSRGRNRSS GKRPMRSCDI ELEEIRAYFH MPITKAAMEM NIGLTVLKKR CRDLGITRWP  180
HRKLKSLNTL ISNIQEVGKC SSDLNIKEEL KSLEEHRKLM EENPEIQLTE ETKKLRQACF  240
KANYKRRVAM QRPFLQPIQR ISFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.16e-44Nin-like family protein