PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699914.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 266aa    MW: 30811 Da    PI: 9.4391
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699914.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003190111323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C++C+++++++ +L  H +  H
  XP_020699914.1  90 CSICSRVYPTSRLLSIHVSEaH 111
                     *****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MEASGLEFPH WIAVRRRFAP HDPFFVAGNI ERELLAKQVA LELTENERYQ IQRMEDAGRF  60
VHCPIVSCGA RLSCLEDFED HYHARHMSAC SICSRVYPTS RLLSIHVSEA HDSFFAAKVA  120
HGFPMYECLV EGCGAKLKSY KSRQQHLIDK HKFSSSFEFK KAKPSKHQRQ NKQHAAQMKE  180
VWEDRKPFTV QQKKYQPKKN PQNEQESLCN RMEVEEIDKL VSSVSKLSTS DSTPSNISFG  240
RRHSRAFTFI PRSLRQNVKH QSNAME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-75C2H2 family protein