PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699823.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 573aa    MW: 62530.7 Da    PI: 4.942
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.26e-1412045641373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++ + ++a+a+L+++s las+++ +m+++a yf+eALa+r++         l+p++++ ++ + +      f+e +P+lkf+h
  XP_020699823.1 204 LVHALLACAEAVQQANYKAAEAILKQISILASSQAGAMRKVAGYFAEALARRIYC--------LHPTQDTFDS-AFSDILEMHFYESFPYLKFAH 289
                     689***************************************************9........6666665333.333233345************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+i+qG+QWpaL+qaLa Rp+gpps+R+Tg+g+p+++++++l+++g++La++A++++v+fe++ lva++l d+e
  XP_020699823.1 290 FTANQAILEAFSGCRRVHVIDFGIKQGMQWPALMQALALRPGGPPSFRLTGIGPPSPDNSNALQQVGWKLAQLADTIHVNFEYRGLVANNLVDIE 384
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+ ++ Ea+a+n+v++lh+ll++++++e     +L++v+sl+P++++vveqea+hn++sFlerf+e+l+yys++fdsle  ++ e ++++++
  XP_020699823.1 385 PFMLESDESEAVAINSVFELHNLLARPGAIEI----LLSTVRSLRPRIMTVVEQEANHNAGSFLERFTESLHYYSTMFDSLEWVAGGEGQQDQVM 475
                     ********************************....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++++lgr+i+nvvaceg er+erhetl++Wr r++ aG++pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW
  XP_020699823.1 476 SEVFLGRQICNVVACEGPERTERHETLAQWRLRMNGAGMRPVNLGSNAFKQASMLLALFAgGDGYRVEENEGCLTLGWHTRPLIATSAW 564
                     ***************************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MKTEHLESCR GGGIDGFLPS KEKMMAMEET DAGMDEQLAA LGYKVRASDM ANVAQRLEQL  60
DMAIGGSAAQ DDALLSHLAS DTVHYNPSDI SNWLENMLSE LNAPPIPAPT ATHPKSISFD  120
FPSENLSSSV PSPFDPDYCL RSDYQVEGRS RNRKRMRTSS SSSSTSRTAA PAIESIPAVV  180
AATEVSSTNP LVVMVDSQEA GIRLVHALLA CAEAVQQANY KAAEAILKQI SILASSQAGA  240
MRKVAGYFAE ALARRIYCLH PTQDTFDSAF SDILEMHFYE SFPYLKFAHF TANQAILEAF  300
SGCRRVHVID FGIKQGMQWP ALMQALALRP GGPPSFRLTG IGPPSPDNSN ALQQVGWKLA  360
QLADTIHVNF EYRGLVANNL VDIEPFMLES DESEAVAINS VFELHNLLAR PGAIEILLST  420
VRSLRPRIMT VVEQEANHNA GSFLERFTES LHYYSTMFDS LEWVAGGEGQ QDQVMSEVFL  480
GRQICNVVAC EGPERTERHE TLAQWRLRMN GAGMRPVNLG SNAFKQASML LALFAGGDGY  540
RVEENEGCLT LGWHTRPLIA TSAWCVAGAG ESG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148156GRSRNRKRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein