PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699606.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 644aa MW: 73818 Da PI: 5.3007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.4	1.3e-13	444	491	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f+ Lr+l+P+ + K++K +iL ++eY+k+L+ XP_020699606.1 444 ANHVLSERRRREKLNEKFHVLRSLVPSiS------KVDKTSILADTIEYLKELE 491 579999*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MVDMQSQEEV TGNHFRKQLA ACVRSIQWSY AIFWSQSADQ EGLLEWNDGF YNGDIKTRKT 60 TQPIECKADQ MALQRSEQLR ELYESLSIVA CNEQNRRPFA SLSPEDLTDA EWYYLVCMSF 120 TFNLGQDLPG RVFEHNEPVW LSNAQFADNR TFSRCLLAKS ASIQTVVGLP FMNGVLELGT 180 FELVLEDPVL VQSIKNSFWE FEDPVSSENS TSSPPFVGKE VDNVHPVLDH EVDDSILFEN 240 QSEFMHDNVP ELHPSICKKI LSISERRSNV CDDHLRIKRQ DWQWNVHRRN FMDDEVDNGL 300 HDSLNSSECP SMSFVQNILS SPRGERVKGN MPDNLQEDNH AKFGSFGVEG DGSHYACTLS 360 TILGNLKHQI SLPGITFEKS SNKSSFKVWK RDSRASKSFT KTPQRMLKNI LIDGKWMNGD 420 LVKLQEEQVS RNKTWKTEPD DANANHVLSE RRRREKLNEK FHVLRSLVPS ISKVDKTSIL 480 ADTIEYLKEL ERRVEELESY REEADPEMTA RRKHPDTAER TSDNYGTNEL LNCRKPSSNK 540 RKASEIDEAK DENHSLLPKK GLFDINITMI EELVLIEMQC PWRDLLLLDI IEAMNNLHLD 600 AQSVQSSIDD GNLSITVRSK FMCEVKASPG TIKRALQRVV SKCN

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MVDMQSQEEV TGNHFRKQLA ACVRSIQWSY AIFWSQSADQ EGLLEWNDGF YNGDIKTRKT  60
TQPIECKADQ MALQRSEQLR ELYESLSIVA CNEQNRRPFA SLSPEDLTDA EWYYLVCMSF  120
TFNLGQDLPG RVFEHNEPVW LSNAQFADNR TFSRCLLAKS ASIQTVVGLP FMNGVLELGT  180
FELVLEDPVL VQSIKNSFWE FEDPVSSENS TSSPPFVGKE VDNVHPVLDH EVDDSILFEN  240
QSEFMHDNVP ELHPSICKKI LSISERRSNV CDDHLRIKRQ DWQWNVHRRN FMDDEVDNGL  300
HDSLNSSECP SMSFVQNILS SPRGERVKGN MPDNLQEDNH AKFGSFGVEG DGSHYACTLS  360
TILGNLKHQI SLPGITFEKS SNKSSFKVWK RDSRASKSFT KTPQRMLKNI LIDGKWMNGD  420
LVKLQEEQVS RNKTWKTEPD DANANHVLSE RRRREKLNEK FHVLRSLVPS ISKVDKTSIL  480
ADTIEYLKEL ERRVEELESY REEADPEMTA RRKHPDTAER TSDNYGTNEL LNCRKPSSNK  540
RKASEIDEAK DENHSLLPKK GLFDINITMI EELVLIEMQC PWRDLLLLDI IEAMNNLHLD  600
AQSVQSSIDD GNLSITVRSK FMCEVKASPG TIKRALQRVV SKCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	450	455	ERRRRE
2	451	456	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-136	bHLH family protein