PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 47939.9 Da PI: 8.1607 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 68 | 94 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +C+F+H+p XP_020699373.1 68 PGEADCAYYIRTGLCRFGITCRFNHPP 94 57899********************97 PP | |||||||
2 | zf-CCCH | 30.5 | 6.1e-10 | 99 | 118 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ XP_020699373.1 99 YYLKTGTCKFGPTCKFHHPK 118 8*****************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7.1e-11 | 140 | 164 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_020699373.1 140 EKECAYYIRTGQCKFGNTCKFHHPQ 164 679********************97 PP | |||||||
4 | zf-CCCH | 38.2 | 2.3e-12 | 299 | 325 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_020699373.1 299 PGEPECQFYMKTGDCKFGAVCRFHHPR 325 5799*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 5.9e-13 | 345 | 370 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+Ck+G++CkF H+ XP_020699373.1 345 PGEPLCIFYSRYGICKFGPNCKFDHP 370 589**********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence |
MEFDGGGRPM EFDGGGGVQL PPTRSANLAV TEASASSPLA TSLDEESMWQ MSLRVGDNIE 60 PGPFPERPGE ADCAYYIRTG LCRFGITCRF NHPPNRKLYY LKTGTCKFGP TCKFHHPKDK 120 AGITGRVQVN VLGYPLRPNE KECAYYIRTG QCKFGNTCKF HHPQPSNAML SLRGSPVYPS 180 VQSPTTPGQQ SLTGALTNWP LSKASFISPR WQGSSSYAQL ILPQGLVQVP SWSSFPGQYG 240 SASSPENQQQ NSGNAQFYGT SHQSETSTGS SASFSSFRFG SVPLGQYALQ RDGIFPERPG 300 EPECQFYMKT GDCKFGAVCR FHHPRERLIP APNCVLSPLG LPLRPGEPLC IFYSRYGICK 360 FGPNCKFDHP VAAPMGIFAY GLSTSSSPNV PVVRRLLGSS SALPALTFSS DGPLEAGPGK 420 SRRLSLSDSQ QIDSGDEDVE SE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-125 | C3H family protein |