PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699372.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 461aa MW: 50028.3 Da PI: 8.2307

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.2e-10	68	94	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ++ rtG C++G +C+F+H+p XP_020699372.1 68 PGEADCAYYIRTGLCRFGITCRFNHPP 94 57899********************97 PP
2	zf-CCCH	38.4	2.1e-12	113	137	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_020699372.1 113 QPECQYYLKTGTCKFGPTCKFHHPK 137 799********************96 PP
3	zf-CCCH	33.4	7.4e-11	159	183	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_020699372.1 159 EKECAYYIRTGQCKFGNTCKFHHPQ 183 679********************97 PP
4	zf-CCCH	38.2	2.5e-12	318	344	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_020699372.1 318 PGEPECQFYMKTGDCKFGAVCRFHHPR 344 5799*********************96 PP
5	zf-CCCH	40.1	6.2e-13	364	389	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++lC f++r+G+Ck+G++CkF H+ XP_020699372.1 364 PGEPLCIFYSRYGICKFGPNCKFDHP 389 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MEFDGGGRPM EFDGGGGVQL PPTRSANLAV TEASASSPLA TSLDEESMWQ MSLRVGDNIE 60 PGPFPERPGE ADCAYYIRTG LCRFGITCRF NHPPNRKLAV SRMKGGYPER IGQPECQYYL 120 KTGTCKFGPT CKFHHPKDKA GITGRVQVNV LGYPLRPNEK ECAYYIRTGQ CKFGNTCKFH 180 HPQPSNAMLS LRGSPVYPSV QSPTTPGQQS LTGALTNWPL SKASFISPRW QGSSSYAQLI 240 LPQGLVQVPS WSSFPGQYGS ASSPENQQQN SGNAQFYGTS HQSETSTGSS ASFSSFRFGS 300 VPLGQYALQR DGIFPERPGE PECQFYMKTG DCKFGAVCRF HHPRERLIPA PNCVLSPLGL 360 PLRPGEPLCI FYSRYGICKF GPNCKFDHPV AAPMGIFAYG LSTSSSPNVP VVRRLLGSSS 420 ALPALTFSSD GPLEAGPGKS RRLSLSDSQQ IDSGDEDVES E

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MEFDGGGRPM EFDGGGGVQL PPTRSANLAV TEASASSPLA TSLDEESMWQ MSLRVGDNIE  60
PGPFPERPGE ADCAYYIRTG LCRFGITCRF NHPPNRKLAV SRMKGGYPER IGQPECQYYL  120
KTGTCKFGPT CKFHHPKDKA GITGRVQVNV LGYPLRPNEK ECAYYIRTGQ CKFGNTCKFH  180
HPQPSNAMLS LRGSPVYPSV QSPTTPGQQS LTGALTNWPL SKASFISPRW QGSSSYAQLI  240
LPQGLVQVPS WSSFPGQYGS ASSPENQQQN SGNAQFYGTS HQSETSTGSS ASFSSFRFGS  300
VPLGQYALQR DGIFPERPGE PECQFYMKTG DCKFGAVCRF HHPRERLIPA PNCVLSPLGL  360
PLRPGEPLCI FYSRYGICKF GPNCKFDHPV AAPMGIFAYG LSTSSSPNVP VVRRLLGSSS  420
ALPALTFSSD GPLEAGPGKS RRLSLSDSQQ IDSGDEDVES E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-140	C3H family protein