PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020699204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | GATA | ||||||||
Protein Properties | Length: 243aa MW: 26441.7 Da PI: 9.9146 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.5 | 8.8e-19 | 152 | 186 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + +Tp+WR gp+g+ktLCnaCG+++++ +l XP_020699204.1 152 CRHCESEETPQWRAGPEGPKTLCNACGVRFKSGRL 186 *******************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MFKPTAAADF ADELFLLDFS DEKGSTNPNP SRRRAAHFFQ EILDADVDGL HGLAAQEGKN 60 EEEEEELEWL ANKDVFPALE TSFDLSAQSF SSSSAASGDR RSPVSVLASA LPFRAPAKLR 120 TKGQRRRRKT LPCFIPPPPA AHPAASAGKR KCRHCESEET PQWRAGPEGP KTLCNACGVR 180 FKSGRLVPEY RPANSPTFTA SVHSNSHRRI VEMRRQKYGA AASSAAGGHG RGRRSLIAGL 240 AVM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 151 | RRRRKTLPCFIPPPPAAHPAASAGKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-38 | GATA family protein |