PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699161.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 243aa MW: 27921.1 Da PI: 8.971

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+d+v+++G+++W++Ia++++ gR++k+c++rw++ XP_020699161.1 4 RGHWRPAEDEKLKDLVTKYGPHNWNAIAEKLP-GRSGKSCRLRWFNQ 49 899***************************.*********996 PP
2	Myb_DNA-binding	54.2	3.4e-17	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T++E+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_020699161.1 56 RSPFTEDEEERLLASHRIHGNR-WSVIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MCSRGHWRPA EDEKLKDLVT KYGPHNWNAI AEKLPGRSGK SCRLRWFNQL DPRINRSPFT 60 EDEEERLLAS HRIHGNRWSV IARLFPGRTD NAVKNHWHVI MARKVRERSR FHGKRPSFSS 120 SSSVIMDESS SNAQGKQGSL KDPQGFFSLV GNYYKKQQNC FLLGDFRSNS DELQSWIQYG 180 FGADFSLGGR KNPIEFYDFL QVNSDSNGTK CCSSVEDEKD ETDQQEQSKA RPFFDFLAVN 240 GSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	9e-77	MYB family protein