PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699053.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 542aa MW: 59936.7 Da PI: 7.9162

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.7e-32	189	246	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve++ +++++ei+Y+g+Hnh+k XP_020699053.1 189 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKNL-EGQITEIVYKGTHNHPK 246 7**************************************.*************85 PP
2	WRKY	102.7	2e-32	362	420	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k++er++ d ++v++tYeg+Hnh+ XP_020699053.1 362 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHIERASYDLRAVITTYEGKHNHD 420 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MSSSAGSFEA SSAIFSFSTP HTTSFSDLLC GADDASTADE TSKSVRGFSD KGGGGGIPKF 60 KSITPPSLPI SPPPFSPSSY FAIPAGLSPA ELLDSPVLLS SNNRLLPSPT TGTFPLKAFN 120 WSGNSGNHYE DKKDVNRAFS DFSFQTQQRL NVFKGSQQSW NYQEPNIKTE LSAPNVQANN 180 TIKEQKKSED GYNWRKYGQK QVKGSENPRS YYKCTFPNCP TKKKVEKNLE GQITEIVYKG 240 THNHPKPQST RRNSSSSSSQ SFQPLVSSAA ASEASEHSHG VRSGTAMESV ATPDNSSVSF 300 GEDEVDRNIQ RTNRASEEFE EEEPDAKRWK KEGENEGASV AGNKTVREPR VVVQTTSDID 360 ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT VGCPVRKHIE RASYDLRAVI TTYEGKHNHD 420 IPAARGSSNH SANRPPALEN AQAITTTIRP SPAVAANSRF GQRFDTFQHS HSPFALEMLP 480 TDQGHYDDGF SGFGNPSNSY MNHHQQQQQQ QQQQQQQKQT GNLFPVAKEE PRDDMFFESL 540 LC

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MSSSAGSFEA SSAIFSFSTP HTTSFSDLLC GADDASTADE TSKSVRGFSD KGGGGGIPKF  60
KSITPPSLPI SPPPFSPSSY FAIPAGLSPA ELLDSPVLLS SNNRLLPSPT TGTFPLKAFN  120
WSGNSGNHYE DKKDVNRAFS DFSFQTQQRL NVFKGSQQSW NYQEPNIKTE LSAPNVQANN  180
TIKEQKKSED GYNWRKYGQK QVKGSENPRS YYKCTFPNCP TKKKVEKNLE GQITEIVYKG  240
THNHPKPQST RRNSSSSSSQ SFQPLVSSAA ASEASEHSHG VRSGTAMESV ATPDNSSVSF  300
GEDEVDRNIQ RTNRASEEFE EEEPDAKRWK KEGENEGASV AGNKTVREPR VVVQTTSDID  360
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTT VGCPVRKHIE RASYDLRAVI TTYEGKHNHD  420
IPAARGSSNH SANRPPALEN AQAITTTIRP SPAVAANSRF GQRFDTFQHS HSPFALEMLP  480
TDQGHYDDGF SGFGNPSNSY MNHHQQQQQQ QQQQQQQKQT GNLFPVAKEE PRDDMFFESL  540
LC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-104	WRKY family protein