PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699012.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 345aa MW: 39421.7 Da PI: 6.783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.6	1.4e-54	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL++k+ ++ + + +++ vd++k+ePwdLp+k+k +ekewyf+++rd+ky+tg+r+nrat+sgyWkatgkdke+++ XP_020699012.1 12 LPPGFRFHPTDEEIITHYLTPKILNHGFVT-RAMGVVDLNKCEPWDLPSKAKMGEKEWYFYCQRDRKYPTGTRTNRATESGYWKATGKDKEIYRG 105 79***********************998.88***********99999************************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ l+g+kktLvfy+grapkgekt+Wv+heyrl XP_020699012.1 106 rSEVLIGMKKTLVFYTGRAPKGEKTNWVIHEYRL 139 45556*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MVMIMEDTNF LLPPGFRFHP TDEEIITHYL TPKILNHGFV TRAMGVVDLN KCEPWDLPSK 60 AKMGEKEWYF YCQRDRKYPT GTRTNRATES GYWKATGKDK EIYRGRSEVL IGMKKTLVFY 120 TGRAPKGEKT NWVIHEYRLQ GNCTSLSNLY KPSKDEWVVC RVFHKNNNGA KSSSIPIDAS 180 LHRIKGFKEE LLNSSNTLPL LMDPPYFNAS IGGGGVHEFK AIEPPMPSYF SFLNEDDDDM 240 MMNNPPPRTQ SSYWSMPGDQ IRDYFDGQEQ QVITMQSTQL LPIRRHCKAE QFSNQSMLSQ 300 DTGISTDRST DVSSVIAKHD ISIEDFDVPS IATGGVLDFC SMWKC

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MVMIMEDTNF LLPPGFRFHP TDEEIITHYL TPKILNHGFV TRAMGVVDLN KCEPWDLPSK  60
AKMGEKEWYF YCQRDRKYPT GTRTNRATES GYWKATGKDK EIYRGRSEVL IGMKKTLVFY  120
TGRAPKGEKT NWVIHEYRLQ GNCTSLSNLY KPSKDEWVVC RVFHKNNNGA KSSSIPIDAS  180
LHRIKGFKEE LLNSSNTLPL LMDPPYFNAS IGGGGVHEFK AIEPPMPSYF SFLNEDDDDM  240
MMNNPPPRTQ SSYWSMPGDQ IRDYFDGQEQ QVITMQSTQL LPIRRHCKAE QFSNQSMLSQ  300
DTGISTDRST DVSSVIAKHD ISIEDFDVPS IATGGVLDFC SMWKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	7e-90	NAC family protein