PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020698688.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27469.7 Da    PI: 5.5134
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020698688.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i+n+  r  t+ kRr g+lKK +ELS+LC++ ++ +++s++ 
  XP_020698688.1 11 INNDATRRATLKKRRRGLLKKVNELSILCGVSACAVVYSPQT 52
                    99*************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MARKKVTLAY INNDATRRAT LKKRRRGLLK KVNELSILCG VSACAVVYSP QTEQPEVFPS  60
VEEAKRILTD LTNMPEIDKN KKMVNQRSFL EQRLVKLSQQ VLRLEHENKE LSTTVCLRQC  120
LAGRPVDSLS KEEADDMLDL VNRKLNALQV RMHQLGPLML PPVMMEDMDV KVGGIGYQGV  180
EIEEMREYEW IAGNGGVGVG GVEEVMGGGG GSGGGGGEGA ELMEVLIERL NGSRSAWEEG  240
LLPLPAPYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAYINNDATRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-30M-type_MADS family protein