PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698019.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 650aa MW: 74118.2 Da PI: 6.9932

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	2e-08	464	505	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W +eE e l ++v+++++g +W+ I++++g+gR+ +++ XP_020698019.1 464 KPWGKEEIEMLRKGVQKYPKGtsrRWEVISEYIGTGRSVEEI 505 69***********************************99876 PP
2	Myb_DNA-binding	28.3	4.2e-09	592	636	2	44
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 ++W+ + l++a k ++++ +W+++a+ ++ g+t +qck ++ XP_020698019.1 592 DPWSSTQERALIQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKF 636 69******************************.******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MEGLRNLLLI TYSEELLDGE PVAVSSNCLP IKALNYEPAG HSFHSAARKF LGCYEEETDR 60 DEQSEFSDDR NQSYMPSSDF YSNKGKKKSG SGDKQQDHYA LLGLGHLRFL ATEEQIRKSY 120 RETALKYHPD KQAAILLAEE TDAAKQEKKD EIENHFKSIQ EAYEILIDPL KRRIYDSTDE 180 FDDEIPTECA PQDFFKVFGP AFLRNARWSV SQPAPCLGED KTIMAEVDSF YNFWYTFKSW 240 REFPHADEFD LEQAESRDHK RWMERQNSKL REKAKKEEYA RIRALVDSAY KRDPRILRRK 300 EEEKVEKQKR KEAKFLAKKL QEEEAARAAE EEKRVKEEEE KRAAEIALTQ KKQKEKDKKV 360 LRKERNRLRS LSSSLVSKSL LDLSEEDVES LCTSLGMEQL RILCDNMEHK EGFDRAHLLN 420 SALNIGNSHA AEPEGKHLQP NSSSGHCAAA VMPGSILNSE KKEKPWGKEE IEMLRKGVQK 480 YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA NAFGTFLEKR KPAPSIESPL 540 TTRVESEGLS ANGAAEKPSA KATNLSSVND SSQDSTVGEF PLSNGTSSGM EDPWSSTQER 600 ALIQALKTFP KETSQRWERV AAAVPGKTVN QCKKKFTLMK ENFRNKKGSD

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MEGLRNLLLI TYSEELLDGE PVAVSSNCLP IKALNYEPAG HSFHSAARKF LGCYEEETDR  60
DEQSEFSDDR NQSYMPSSDF YSNKGKKKSG SGDKQQDHYA LLGLGHLRFL ATEEQIRKSY  120
RETALKYHPD KQAAILLAEE TDAAKQEKKD EIENHFKSIQ EAYEILIDPL KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNARWSV SQPAPCLGED KTIMAEVDSF YNFWYTFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNSKL REKAKKEEYA RIRALVDSAY KRDPRILRRK  300
EEEKVEKQKR KEAKFLAKKL QEEEAARAAE EEKRVKEEEE KRAAEIALTQ KKQKEKDKKV  360
LRKERNRLRS LSSSLVSKSL LDLSEEDVES LCTSLGMEQL RILCDNMEHK EGFDRAHLLN  420
SALNIGNSHA AEPEGKHLQP NSSSGHCAAA VMPGSILNSE KKEKPWGKEE IEMLRKGVQK  480
YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA NAFGTFLEKR KPAPSIESPL  540
TTRVESEGLS ANGAAEKPSA KATNLSSVND SSQDSTVGEF PLSNGTSSGM EDPWSSTQER  600
ALIQALKTFP KETSQRWERV AAAVPGKTVN QCKKKFTLMK ENFRNKKGSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-120	MYB family protein