PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697754.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 368aa MW: 38866.1 Da PI: 8.3597

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.2	4.9e-41	75	235	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s+g XP_020697754.1 75 PPKRSSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAGpshhlrs 169 789******************************************************************99987777777777444446666667 PP TCP 89 .................kaaksaakskksqksaasalnlakesrakararare.rtrekmriknkl 136 + + ++s+ s ln+++ s a+a + r+ r+ ++ ++++++ XP_020697754.1 170 aaaahyfssaaaaltasPSVRLRSDWDVGPSSTPSLLNFQDASDAEAAGNIRKrRWDQELNQQQQQ 235 777777777777776542222222444445555556777778888888888885666666666555 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEGENIGGGG PRRANFPLQL LEKKESIDDP SCSTSAAAYP TLAISSSAAP SPTHHHHQHH 60 HHSLSIPEEP AKKPPPKRSS TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET 120 IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSTIS AGPSHHLRSA AAAHYFSSAA 180 AALTASPSVR LRSDWDVGPS STPSLLNFQD ASDAEAAGNI RKRRWDQELN QQQQQQAMAG 240 YTTALTQGLM PTPIWSAGGG ASASGEPVWP FAHMGAATMF RGSMSAGLHF MNFPAAPMAL 300 LPGQQLGLGS GSGTEGHLGI LAALNSYRPV GSGHEVAATT HHHHYHQQQH HSGGGGSERN 360 DTMSTSDS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEGENIGGGG PRRANFPLQL LEKKESIDDP SCSTSAAAYP TLAISSSAAP SPTHHHHQHH  60
HHSLSIPEEP AKKPPPKRSS TKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET  120
IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSTIS AGPSHHLRSA AAAHYFSSAA  180
AALTASPSVR LRSDWDVGPS STPSLLNFQD ASDAEAAGNI RKRRWDQELN QQQQQQAMAG  240
YTTALTQGLM PTPIWSAGGG ASASGEPVWP FAHMGAATMF RGSMSAGLHF MNFPAAPMAL  300
LPGQQLGLGS GSGTEGHLGI LAALNSYRPV GSGHEVAATT HHHHYHQQQH HSGGGGSERN  360
DTMSTSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-48	TCP family protein