PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697290.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 588aa MW: 64844.7 Da PI: 8.1652

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	59	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEde l +av+++ g++Wk+Ia+ ++ Rt+ qc +rwqk+ XP_020697290.1 59 KGGWTPEEDETLRRAVELHKGRSWKKIAESIP-DRTEVQCLHRWQKV 104 688***************************.**********96 PP
2	Myb_DNA-binding	52.4	1.2e-16	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ ++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_020697290.1 111 KGSWTPLEDDVIINLVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 799***************************.***********97 PP
3	Myb_DNA-binding	52.1	1.5e-16	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE+ l +a+ ++G++ W+ Ia+ + gRt++++k++w++ XP_020697290.1 163 KDSWTLEEEIELMKAHIKHGNK-WAEIAKVIR-GRTDNSIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MTTMKIKESC AENKQSITAS GSSLSEENYG FSRMSPAASY PATSTPSHRR TSGPIRRAKG 60 GWTPEEDETL RRAVELHKGR SWKKIAESIP DRTEVQCLHR WQKVINPELV KGSWTPLEDD 120 VIINLVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPE IRKDSWTLEE EIELMKAHIK 180 HGNKWAEIAK VIRGRTDNSI KNHWNSSLRK KLDYYLRTGK LPPVQGTCMF NTAPDAGNLG 240 ARQLIYCLNG GLETDVKNVP ETSSNVSSSL RAKMADKHDS VNPLTASVSD SHHLRTGNLA 300 PVQRTGILSL NPWISSRDVV VGEADNSISG ECDAQVPEIV PVDEQDASDS GVKYCKCIGK 360 NSQNEEPSET TLCSVPSNVS FLCYKPPRLE DLAIDKWSQM SKCSSEQSIE SFLKDAARSF 420 TNTPSIIKRK EAITSLPSDI VTDTMQSNEI RVHDGCTPND GNVCSYTEGS RSSVSKFYSG 480 ACASNGALFT NEDDFNVSPP YRISCKRKAI FRSVEKQLDF TLAEGYSDGN AKDSSLAAKD 540 SSLAGNINSL SPNSTTVQAL SMQRRRLAEN PSGGNERDYS SITKMGVV

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MTTMKIKESC AENKQSITAS GSSLSEENYG FSRMSPAASY PATSTPSHRR TSGPIRRAKG  60
GWTPEEDETL RRAVELHKGR SWKKIAESIP DRTEVQCLHR WQKVINPELV KGSWTPLEDD  120
VIINLVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPE IRKDSWTLEE EIELMKAHIK  180
HGNKWAEIAK VIRGRTDNSI KNHWNSSLRK KLDYYLRTGK LPPVQGTCMF NTAPDAGNLG  240
ARQLIYCLNG GLETDVKNVP ETSSNVSSSL RAKMADKHDS VNPLTASVSD SHHLRTGNLA  300
PVQRTGILSL NPWISSRDVV VGEADNSISG ECDAQVPEIV PVDEQDASDS GVKYCKCIGK  360
NSQNEEPSET TLCSVPSNVS FLCYKPPRLE DLAIDKWSQM SKCSSEQSIE SFLKDAARSF  420
TNTPSIIKRK EAITSLPSDI VTDTMQSNEI RVHDGCTPND GNVCSYTEGS RSSVSKFYSG  480
ACASNGALFT NEDDFNVSPP YRISCKRKAI FRSVEKQLDF TLAEGYSDGN AKDSSLAAKD  540
SSLAGNINSL SPNSTTVQAL SMQRRRLAEN PSGGNERDYS SITKMGVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.2	1e-124	MYB family protein